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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:
  • cytosol 2
  • nucleus 3
  • mitochondrion 1
  • plasma membrane 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS6D01G104700.1 Wheat nucleus 99.61 99.69
TraesCS6A01G115900.1 Wheat golgi 99.45 99.53
TraesCS6B01G143700.1 Wheat cytosol, nucleus, plasma membrane 99.38 99.45
Os02t0146400-01 Rice cytosol, nucleus 27.44 98.32
EES04510 Sorghum cytosol, nucleus, plasma membrane 93.14 93.36
Zm00001d053882_P001 Maize plastid 92.67 92.89
HORVU7Hr1G022470.3 Barley cytosol 36.32 91.19
Zm00001d015248_P018 Maize cytosol, nucleus, plasma membrane 92.75 90.7
HORVU6Hr1G065110.1 Barley cytosol 36.17 89.4
HORVU0Hr1G009840.1 Barley cytosol, nucleus, plasma membrane 24.32 88.64
KXG31550 Sorghum cytosol, nucleus, plasma membrane 88.85 88.58
Solyc07g041790.1.1 Tomato cytosol, nucleus 4.99 87.67
GSMUA_Achr10P... Banana nucleus 51.21 85.77
Os02t0478900-00 Rice nucleus 61.65 85.33
PGSC0003DMT400094070 Potato mitochondrion 18.24 80.14
VIT_19s0015g00400.t01 Wine grape cytosol 4.75 78.21
PGSC0003DMT400023774 Potato cytosol 18.32 77.81
VIT_19s0015g00420.t01 Wine grape cytosol 4.83 77.5
HORVU0Hr1G014020.1 Barley nucleus, plastid 19.56 55.78
Protein Annotations
Gene3D:1.25.10.10MapMan:16.4.1.2.4.1EMBL:AK357387InterPro:ARM-likeInterPro:ARM-type_foldncoils:Coil
UniProt:F2D0I0GO:GO:0000245GO:GO:0003674GO:GO:0003676GO:GO:0003723GO:GO:0003729
GO:GO:0005488GO:GO:0006139GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016043
InterPro:HEAT_type_2EnsemblPlantsGene:HORVU6Hr1G020850EnsemblPlants:HORVU6Hr1G020850.3InterPro:IPR011989InterPro:IPR021133PFAM:PF08920
PFscan:PS50077PANTHER:PTHR12097InterPro:SF3b_su1InterPro:SF3b_su1-likeSMART:SM01349SUPFAM:SSF48371
InterPro:TOGUniParc:UPI0002004FFBSEG:seg:::
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2D0I0]
Coordinates
chrchr6H:+:60815671..60821608
Molecular Weight (calculated)
142258.0 Da
IEP (calculated)
6.099
GRAVY (calculated)
-0.315
Length
1283 amino acids
Sequence
(BLAST)
0001: MDGIDAELAR AQDERRKLEE ALAAGAPMAV SSVTFDKDLY GGGGSGSDRF AGYDTSIPAS EDDAPEDDGA EPTATNPAVR RLASYTGHAV AAADIPRSED
0101: DDGMPAKRSQ RIIDREDDYR RRRLDRIISP QRHDAFASGE ATPDPSVRTY ADAMRESKVQ QEKEHVLREI AKKRKEEEEE KAKEKKAAPQ PQPAATKRRN
0201: RWDQSQDGDA AAGAKKSKTS DWDAPDATPG IGRWDATPGR VGDATPSVRR NRWDETPTPG RMADADATPA AGGITPGATP SGAWDATPKL PGGLVTPTPK
0301: KQRSRWDETP ASMGSATPGG TAATPAGFNT PGQTPFGAEN LATPTPGHLA ARGPMTPEQY QLLRWERDIE ERNRPLTDEE LDSMFPQEGY KILEPPASYQ
0401: PIRTPARKLL ATPTPLGTPM YAIPEENRGQ QFDVPKDLGP GLPLMKPEDY QYFGTLLNED EEEQLTPEEQ KERKIMKLLL KVKNGTPPQR KTALRQLTDK
0501: AREFGAGPLF NKILPLLMQP TLEDQERHLL VKVIDRVLYK LDELVRPFVH KILVVIEPLL IDEDYYARVE GREIISNLSK AAGLATMIAA MRPDIDNIDE
0601: YVRNTTARAF SVVASALGIP ALLPFLKAVC QSKKSWQARH TGIKIVQQIA ILMGCAVLPH LKNLVEIIEH GLSDENQKVR TITALSLAAL AEAAAPYGIE
0701: SFDSVLKPLW KGIRSHRGKV LAAFLKAIGF IIPLMDALYA SYYTKEVMQV LIREFQSPDE EMKKIVLKVV KQCVSTEGVE ADYIRSDILP DFFKHFWVRR
0801: MALDRRNYKQ LVETTVEMAN KVGVTGIVGK IVEDLKDESE PYRRMVMETI EKVVANLGAS DIDPRLEELL IDGILYAFQE QTSDDANVML NGFGAVVNAL
0901: GQRVKPYLPQ ICGTIKWRLN NKSAKVRQQA ADLISRIAIV MKQCQEEQLM GHLGVVLYEY LGEEYPEVLG SILGALKAIV NVIGMTKMTP PIKDLLPRLT
1001: PILKNRHEKV QENCIDLVGR IADRGAEFVP AREWMRICFE LLEMLKAHKK GIRRATVNTF GYIAKAIGPQ DVLATLLNNL KVQERQNRVC TTVAIAIVAE
1101: TCSPFTVLPA LMNEYRVPEL NVQNGVLKSL SFLFEYIGEM GKDYIYAVTP LLEDALMDRD LVHRQTAASA VKHMALGVAG LGCEDALVHL LNYIWPNIFE
1201: TSPHVINAVM EAIEGMRVAL GAAVVLNYCL QGLFHPARKV REVYWKIYNS LYIGAQDALV ASYPALGDDG DNIFSRPELA MFV
Best Arabidopsis Sequence Match ( AT5G64270.1 )
(BLAST)
0001: MADLDPEIAK TQEERRKMEA DLASLTSLTF DRDLYGGNDR ASYSTSIAPN EEDDANLDTT GSLVAQRLAS YTAPRSILND VARPHNEDDD VGFKPRQSIA
0101: EREGEYRNRR LNRVLSPDRV DAFAMGDKTP DASVRTYTDH MRETALQREK EETMRLIAKK KKEEEEAAAK HQKDSAPPPP ASSSSSSSKR RHRWDLPEED
0201: GAAAKKAKAA SSDWDLPDAA PGIGRWDAPT PGRVSDATPS AGRRNRWDET PTPGRVTDSD ATPGGGVTPG ATPSGVTWDG LATPTPKRQR SRWDETPATM
0301: GSATPMGGVT PGAAYTPGVT PIGGIDMATP TPGQLIFRGP MTPEQLNMQR WEKDIEERNR PLSDEELDAM FPKDGYKVLD PPATYVPIRT PARKLQQTPT
0401: PMATPGYVIP EENRGQQYDV PPEVPGGLPF MKPEDYQYFG SLLNEENEEE LSPEEQKERK IMKLLLKVKN GTPPQRKTAL RQLTDKAREL GAGPLFNKIL
0501: PLLMQPTLED QERHLLVKVI DRILYKLDEM VRPYVHKILV VIEPLLIDED YYARVEGREI ISNLSKAAGL ASMIAAMRPD IDNIDEYVRN TTARAFSVVA
0601: SALGIPALLP FLKAVCQSKR SWQARHTGIK IVQQIAILIG CAVLPHLRSL VEIIEHGLSD ENQKVRTITA LSLAALAEAA APYGIESFDS VLKPLWKGIR
0701: SHRGKVLAAF LKAIGFIIPL MDAIYASYYT KEVMVILIRE FQSPDEEMKK IVLKVVKQCV STEGVEPEYI RSDILPEFFR NFWTRKMALE RRNYKQLVET
0801: TVEVANKVGV ADIVGRVVED LKDESEQYRR MVMETIDKVV TNLGASDIDA RLEELLIDGI LYAFQEQTSD DANVMLNGFG AVVNALGQRV KPYLPQICGT
0901: IKWRLNNKSA KVRQQAADLI SRIAVVMKQC GEEQLMGHLG VVLYEYLGEE YPEVLGSILG ALKAIVNVIG MTKMTPPIKD LLPRLTPILK NRHEKVQENC
1001: IDLVGRIADR GAEFVPAREW MRICFELLEM LKAHKKGIRR ATVNTFGYIA KAIGPQDVLA TLLNNLKVQE RQNRVCTTVA IAIVAETCSP FTVLPALMNE
1101: YRVPELNVQN GVLKSLSFLF EYIGEMGKDY IYAVTPLLED ALMDRDLVHR QTAASAVKHM ALGVAGLGCE DALVHLLNFI WPNIFETSPH VINAVMEAIE
1201: GMRVALGAAV ILNYCLQGLF HPARKVREVY WKIYNSLYIG AQDTLVAAYP VLEDEQNNVY SRPELTMFV
Arabidopsis Description
Nuclear protein-like [Source:UniProtKB/TrEMBL;Acc:Q9FMF9]
SUBAcon: [plasma membrane,nucleus,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.