Factsheet for Os02t0478900-00

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 4
nucleus 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

nucleus: 23303719

msms PMID: 23303719 doi

Q He, L Chen, Y Xu, W Yu

State Key Laboratory for Agrobiotechnology, Institute of Plant Molecular Biology and Agricultural Biotechnology, School of Life Sciences, The Chinese University of Hong Kong, Shatin, Hong Kong.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0015g00400.t01	Wine grape	cytosol	6.58	78.21
HORVU7Hr1G022470.3	Barley	cytosol	42.93	77.89
HORVU6Hr1G065110.1	Barley	cytosol	42.39	75.72
VIT_19s0015g00420.t01	Wine grape	cytosol	6.47	75.0
Solyc07g041790.1.1	Tomato	cytosol, nucleus	5.61	71.23
PGSC0003DMT400094070	Potato	mitochondrion	22.44	71.23
Os02t0146400-01	Rice	cytosol, nucleus	26.97	69.83
KRH21266	Soybean	nucleus	84.25	67.97
PGSC0003DMT400023774	Potato	cytosol	22.01	67.55
EES04510	Sorghum	cytosol, nucleus, plasma membrane	86.62	62.73
Zm00001d053882_P001	Maize	plastid	86.52	62.66
TraesCS5D01G025300.1	Wheat	nucleus	82.63	62.48
KRH11024	Soybean	nucleus	69.04	62.14
HORVU6Hr1G020850.3	Barley	cytosol, nucleus, plasma membrane	85.33	61.65
TraesCS6B01G143700.1	Wheat	cytosol, nucleus, plasma membrane	85.22	61.62
TraesCS6D01G104700.1	Wheat	nucleus	85.22	61.62
TraesCS6A01G115900.1	Wheat	golgi	85.22	61.62
Zm00001d015248_P018	Maize	cytosol, nucleus, plasma membrane	86.41	61.05
KXG31550	Sorghum	cytosol, nucleus, plasma membrane	84.68	60.99
Bra037770.1-P	Field mustard	cytosol, nucleus, plasma membrane	82.85	60.57
AT5G64270.1	Thale cress	cytosol, nucleus, plasma membrane	82.74	60.44
GSMUA_Achr10P...	Banana	nucleus	49.3	59.66
TraesCS5B01G017300.1	Wheat	cytosol, nucleus, plasma membrane	82.96	59.61
Bra024281.1-P	Field mustard	nucleus	79.5	59.2
Os02t0147300-01	Rice	nucleus	0.97	4.86

Protein Annotations

Gene3D:1.25.10.10	MapMan:16.4.1.2.4.1	UniProt:A0A0P0VIZ4	InterPro:ARM-like	InterPro:ARM-type_fold	ProteinID:BAS78674.1
GO:GO:0000245	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005686	GO:GO:0005689
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0071004	GO:GO:0071013	InterPro:HEAT_type_2	InterPro:IPR011989	InterPro:IPR021133
EnsemblPlantsGene:Os02g0478900	EnsemblPlants:Os02t0478900-00	PFAM:PF08920	PFscan:PS50077	PANTHER:PTHR12097	InterPro:SF3b_su1
InterPro:SF3b_su1-like	SUPFAM:SSF48371	UniParc:UPI000393969C	SEG:seg	:	:

Description

Similar to Splicing factor 3B subunit 1. (Os02t0478900-00)

Coordinates

chr2:+:16450471..16453254

Molecular Weight (calculated)

103519.0 Da

IEP (calculated)

7.006

GRAVY (calculated)

-0.140

Length

927 amino acids

Sequence
(BLAST)

001: MADADGTPAP SVAWDSSSTP TPKKQRSRWD ETPAGVGSTA PRATDAVTPA GYAPGPTPFD AADLATPSPG QIARGPMTPE QYQLLRWERD IEGRNMPLTD
101: EELDTMLPQV GYKILDPPAS YQPIRTPARK LLATPTPLFT PLYAIPEENR GQQFDVPKEL PGGLPQMKPE DYQYFGTLLN EGEEEEKLSP EEHKERKILK
201: LLFKVKNGTP QQRKAALRQL TDKAQEFGAG PLFNKILPLL MQPTLEDQER HLLVKVIDRV IYKLDDLVRP FVHKILVVVE PLLIDEDYYA RVEARQIISN
301: LSKAAGLATM IATMRPDIDN TDEYVRNTTA RAFSVVASGL GIPALLPFLK AVCQSKKSWQ ARHTGIKIVQ QIAILMGCAV LPHLRSLVDI IEHGLSDENQ
401: KVRTITALSL AALAEAAAPY GIESFDTVLR PLWKGTKSHR GKVLAAFLKA VGFIIPLMDV EYASYYTRGV IPILIREFQS PDEEMKKIVL KVVKQCVSTE
501: GVEADYIRNG ILPEFFRHFW IRRMALDRRN YKQLVETTVE IANKVGVADI VGRIVEDLKD ESEPYRRMVM ETIEKVVAHL GASDIDRHQE ELLIDGIVYT
601: FQQQTSDDSN VILNGFETVA NALGQRVKPY VPQICGIIKW MLNTSSAKAR QRAADLMSRI AIVMKLCQEE RLMCHLGHIL YESLGEEYPD VLGSILGALK
701: AIVNVVGMTK MTPPIKDLLP RLTPILKNRH EKVQENCIDL VGRVADRGAE FVPAREWMRI CFELLEMLKA HKKGIRRATA NTFGYIAKAI GPEDVLATLL
801: NNLKVQERQN RVCTTVAIAI VAETCSPFTV LPALMNEYRV PEFNVRNGIL KSLSFLFEYI GEMGKDYIYA VTPLLEDALM DRDLVHRQTA ASAVKHMALG
901: VAGLGCEDAL VHLTLSGPTY LRHLPMS

Best Arabidopsis Sequence Match ( AT5G64270.1 )
(BLAST)

0001: MADLDPEIAK TQEERRKMEA DLASLTSLTF DRDLYGGNDR ASYSTSIAPN EEDDANLDTT GSLVAQRLAS YTAPRSILND VARPHNEDDD VGFKPRQSIA
0101: EREGEYRNRR LNRVLSPDRV DAFAMGDKTP DASVRTYTDH MRETALQREK EETMRLIAKK KKEEEEAAAK HQKDSAPPPP ASSSSSSSKR RHRWDLPEED
0201: GAAAKKAKAA SSDWDLPDAA PGIGRWDAPT PGRVSDATPS AGRRNRWDET PTPGRVTDSD ATPGGGVTPG ATPSGVTWDG LATPTPKRQR SRWDETPATM
0301: GSATPMGGVT PGAAYTPGVT PIGGIDMATP TPGQLIFRGP MTPEQLNMQR WEKDIEERNR PLSDEELDAM FPKDGYKVLD PPATYVPIRT PARKLQQTPT
0401: PMATPGYVIP EENRGQQYDV PPEVPGGLPF MKPEDYQYFG SLLNEENEEE LSPEEQKERK IMKLLLKVKN GTPPQRKTAL RQLTDKAREL GAGPLFNKIL
0501: PLLMQPTLED QERHLLVKVI DRILYKLDEM VRPYVHKILV VIEPLLIDED YYARVEGREI ISNLSKAAGL ASMIAAMRPD IDNIDEYVRN TTARAFSVVA
0601: SALGIPALLP FLKAVCQSKR SWQARHTGIK IVQQIAILIG CAVLPHLRSL VEIIEHGLSD ENQKVRTITA LSLAALAEAA APYGIESFDS VLKPLWKGIR
0701: SHRGKVLAAF LKAIGFIIPL MDAIYASYYT KEVMVILIRE FQSPDEEMKK IVLKVVKQCV STEGVEPEYI RSDILPEFFR NFWTRKMALE RRNYKQLVET
0801: TVEVANKVGV ADIVGRVVED LKDESEQYRR MVMETIDKVV TNLGASDIDA RLEELLIDGI LYAFQEQTSD DANVMLNGFG AVVNALGQRV KPYLPQICGT
0901: IKWRLNNKSA KVRQQAADLI SRIAVVMKQC GEEQLMGHLG VVLYEYLGEE YPEVLGSILG ALKAIVNVIG MTKMTPPIKD LLPRLTPILK NRHEKVQENC
1001: IDLVGRIADR GAEFVPAREW MRICFELLEM LKAHKKGIRR ATVNTFGYIA KAIGPQDVLA TLLNNLKVQE RQNRVCTTVA IAIVAETCSP FTVLPALMNE
1101: YRVPELNVQN GVLKSLSFLF EYIGEMGKDY IYAVTPLLED ALMDRDLVHR QTAASAVKHM ALGVAGLGCE DALVHLLNFI WPNIFETSPH VINAVMEAIE
1201: GMRVALGAAV ILNYCLQGLF HPARKVREVY WKIYNSLYIG AQDTLVAAYP VLEDEQNNVY SRPELTMFV

Arabidopsis Description

Nuclear protein-like [Source:UniProtKB/TrEMBL;Acc:Q9FMF9]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.