Factsheet for PGSC0003DMT400023774

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g041790.1.1	Tomato	cytosol, nucleus	21.19	87.67
PGSC0003DMT400094070	Potato	mitochondrion	61.26	63.36
PGSC0003DMT400048954	Potato	mitochondrion	59.6	46.88
HORVU7Hr1G022470.3	Barley	cytosol	75.17	44.42
Os02t0146400-01	Rice	cytosol, nucleus	52.32	44.13
HORVU6Hr1G065110.1	Barley	cytosol	74.5	43.35
CDX84511	Canola	cytosol	72.52	39.89
VIT_19s0015g00420.t01	Wine grape	cytosol	9.27	35.0
VIT_19s0015g00400.t01	Wine grape	cytosol	8.28	32.05
GSMUA_Achr10P...	Banana	nucleus	76.16	30.03
CDY43804	Canola	cytosol, peroxisome, plasma membrane	73.18	26.34
Os02t0478900-00	Rice	nucleus	67.55	22.01
PGSC0003DMT400072223	Potato	cytosol, nucleus, plasma membrane	78.81	18.9
TraesCS5D01G025300.1	Wheat	nucleus	76.49	18.84
Zm00001d053882_P001	Maize	plastid	77.81	18.36
EES04510	Sorghum	cytosol, nucleus, plasma membrane	77.81	18.36
TraesCS6A01G115900.1	Wheat	golgi	77.81	18.33
TraesCS6B01G143700.1	Wheat	cytosol, nucleus, plasma membrane	77.81	18.33
TraesCS6D01G104700.1	Wheat	nucleus	77.81	18.33
HORVU6Hr1G020850.3	Barley	cytosol, nucleus, plasma membrane	77.81	18.32
TraesCS5B01G017300.1	Wheat	cytosol, nucleus, plasma membrane	77.48	18.14
KXG31550	Sorghum	cytosol, nucleus, plasma membrane	76.82	18.03
Zm00001d015248_P018	Maize	cytosol, nucleus, plasma membrane	77.81	17.91
CDX84509	Canola	plastid	0.66	0.63
PGSC0003DMT400090563	Potato	cytosol, nucleus, plastid	0.0	0.0
CDY43803	Canola	nucleus	0.0	0.0
CDX84510	Canola	nucleus, peroxisome, plasma membrane	0.0	0.0

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:107059794	MapMan:35.2	InterPro:ARM-like	InterPro:ARM-type_fold	GO:GO:0000245
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	InterPro:IPR011989	UniProt:M1AIZ2
EnsemblPlantsGene:PGSC0003DMG400009195	PGSC:PGSC0003DMG400009195	EnsemblPlants:PGSC0003DMT400023774	PANTHER:PTHR12097	InterPro:SF3b_su1-like	SUPFAM:SSF48371
UniParc:UPI0002957E09	RefSeq:XP_015162281.1	:	:	:	:

Description

Splicing factor 3B subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400009195]

Coordinates

chr3:-:62135355..62136367

Molecular Weight (calculated)

33970.6 Da

IEP (calculated)

7.456

GRAVY (calculated)

-0.045

Length

302 amino acids

Sequence
(BLAST)

001: MVIETIEKVV ENLGASDIDS RLEELLIDGI LYAFQEQTSD DANVMLNGFG AVVNALGQRV KPYLPQICGT IKWRLNNKSS KVRQQAVDPI SKIAVVMKQC
101: REEQLMGHLG VVLYEYLGEE YPEVLGSILG ALKAIVNVID HGAEFVPARE WMRICFELLE MLKAHKKGIR RATMNTFGYI AKAIEPQDVL ATLLNNLKVQ
201: ERQNRICTTV AIAIVAETCS PFTVLPALMN EYRVPELNVQ NGVLKSLSIL FEYIGEMGKL HNSGEKEIIY SKRETGKWEW VTGHWVNRVI LNGAGPWVKN
301: KK

Best Arabidopsis Sequence Match ( AT5G64270.1 )
(BLAST)

0001: MADLDPEIAK TQEERRKMEA DLASLTSLTF DRDLYGGNDR ASYSTSIAPN EEDDANLDTT GSLVAQRLAS YTAPRSILND VARPHNEDDD VGFKPRQSIA
0101: EREGEYRNRR LNRVLSPDRV DAFAMGDKTP DASVRTYTDH MRETALQREK EETMRLIAKK KKEEEEAAAK HQKDSAPPPP ASSSSSSSKR RHRWDLPEED
0201: GAAAKKAKAA SSDWDLPDAA PGIGRWDAPT PGRVSDATPS AGRRNRWDET PTPGRVTDSD ATPGGGVTPG ATPSGVTWDG LATPTPKRQR SRWDETPATM
0301: GSATPMGGVT PGAAYTPGVT PIGGIDMATP TPGQLIFRGP MTPEQLNMQR WEKDIEERNR PLSDEELDAM FPKDGYKVLD PPATYVPIRT PARKLQQTPT
0401: PMATPGYVIP EENRGQQYDV PPEVPGGLPF MKPEDYQYFG SLLNEENEEE LSPEEQKERK IMKLLLKVKN GTPPQRKTAL RQLTDKAREL GAGPLFNKIL
0501: PLLMQPTLED QERHLLVKVI DRILYKLDEM VRPYVHKILV VIEPLLIDED YYARVEGREI ISNLSKAAGL ASMIAAMRPD IDNIDEYVRN TTARAFSVVA
0601: SALGIPALLP FLKAVCQSKR SWQARHTGIK IVQQIAILIG CAVLPHLRSL VEIIEHGLSD ENQKVRTITA LSLAALAEAA APYGIESFDS VLKPLWKGIR
0701: SHRGKVLAAF LKAIGFIIPL MDAIYASYYT KEVMVILIRE FQSPDEEMKK IVLKVVKQCV STEGVEPEYI RSDILPEFFR NFWTRKMALE RRNYKQLVET
0801: TVEVANKVGV ADIVGRVVED LKDESEQYRR MVMETIDKVV TNLGASDIDA RLEELLIDGI LYAFQEQTSD DANVMLNGFG AVVNALGQRV KPYLPQICGT
0901: IKWRLNNKSA KVRQQAADLI SRIAVVMKQC GEEQLMGHLG VVLYEYLGEE YPEVLGSILG ALKAIVNVIG MTKMTPPIKD LLPRLTPILK NRHEKVQENC
1001: IDLVGRIADR GAEFVPAREW MRICFELLEM LKAHKKGIRR ATVNTFGYIA KAIGPQDVLA TLLNNLKVQE RQNRVCTTVA IAIVAETCSP FTVLPALMNE
1101: YRVPELNVQN GVLKSLSFLF EYIGEMGKDY IYAVTPLLED ALMDRDLVHR QTAASAVKHM ALGVAGLGCE DALVHLLNFI WPNIFETSPH VINAVMEAIE
1201: GMRVALGAAV ILNYCLQGLF HPARKVREVY WKIYNSLYIG AQDTLVAAYP VLEDEQNNVY SRPELTMFV

Arabidopsis Description

Nuclear protein-like [Source:UniProtKB/TrEMBL;Acc:Q9FMF9]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.