Factsheet for PGSC0003DMT400094070

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
nucleus 2
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400048954	Potato	mitochondrion	81.85	62.24
PGSC0003DMT400023774	Potato	cytosol	63.36	61.26
Os02t0146400-01	Rice	cytosol, nucleus	71.92	58.66
HORVU7Hr1G022470.3	Barley	cytosol	77.4	44.23
HORVU6Hr1G065110.1	Barley	cytosol	75.34	42.39
CDX84511	Canola	cytosol	77.05	40.98
CDY43804	Canola	cytosol, peroxisome, plasma membrane	77.74	27.06
GSMUA_Achr10P...	Banana	nucleus	63.7	24.28
Os02t0478900-00	Rice	nucleus	71.23	22.44
TraesCS5D01G025300.1	Wheat	nucleus	78.77	18.76
PGSC0003DMT400072223	Potato	cytosol, nucleus, plasma membrane	80.48	18.67
Zm00001d053882_P001	Maize	plastid	80.14	18.28
EES04510	Sorghum	cytosol, nucleus, plasma membrane	80.14	18.28
TraesCS6A01G115900.1	Wheat	golgi	80.14	18.25
TraesCS6B01G143700.1	Wheat	cytosol, nucleus, plasma membrane	80.14	18.25
TraesCS6D01G104700.1	Wheat	nucleus	80.14	18.25
HORVU6Hr1G020850.3	Barley	cytosol, nucleus, plasma membrane	80.14	18.24
TraesCS5B01G017300.1	Wheat	cytosol, nucleus, plasma membrane	80.14	18.14
KXG31550	Sorghum	cytosol, nucleus, plasma membrane	79.79	18.1
Zm00001d015248_P018	Maize	cytosol, nucleus, plasma membrane	80.14	17.84
CDX84509	Canola	plastid	1.71	1.57
CDY43803	Canola	nucleus	1.03	0.87
PGSC0003DMT400090563	Potato	cytosol, nucleus, plastid	0.0	0.0
CDX84510	Canola	nucleus, peroxisome, plasma membrane	0.0	0.0
VIT_19s0015g00400.t01	Wine grape	cytosol	0.0	0.0
VIT_19s0015g00420.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.25.10.10	MapMan:16.4.1.2.4.1	InterPro:ARM-like	InterPro:ARM-type_fold	GO:GO:0000245	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	InterPro:IPR011989	UniProt:M1DTC2	EnsemblPlantsGene:PGSC0003DMG400043641
PGSC:PGSC0003DMG400043641	EnsemblPlants:PGSC0003DMT400094070	PANTHER:PTHR12097	InterPro:SF3b_su1-like	SUPFAM:SSF48371	UniParc:UPI00029547F2
SEG:seg	:	:	:	:	:

Description

Nuclear protein [Source:PGSC_GENE;Acc:PGSC0003DMG400043641]

Coordinates

chr00:-:12167881..12168759

Molecular Weight (calculated)

33214.9 Da

IEP (calculated)

9.789

GRAVY (calculated)

-0.122

Length

292 amino acids

Sequence
(BLAST)

001: MPLRVKPYLP QICGTIKWRL NNRSAKVRQQ AADLISRIAV VMKQCGEEQL TGHLGVVLYE YLEEEYPEVL GSILGAVKAI VNVIGMTNMT TPIKDLLPRL
101: TPILKNRHEK VQENCIDLVG RIADRGAEFV PAREWLRICL ELLELLKAHK KGIRRATVNT FGYIAKAIGP QDVLATLLNN LKVQERQNRV CTTVAIAIVA
201: ETCSPFTVLP ALMNDYRVPE LNVQNGVLKS LSFLSEYIGE MGKLHNSGEK EIIYSKIQRE RMGKWEWVTR HWVNWVNRVI LNGAGHWVKN RE

Best Arabidopsis Sequence Match ( AT5G64270.1 )
(BLAST)

0001: MADLDPEIAK TQEERRKMEA DLASLTSLTF DRDLYGGNDR ASYSTSIAPN EEDDANLDTT GSLVAQRLAS YTAPRSILND VARPHNEDDD VGFKPRQSIA
0101: EREGEYRNRR LNRVLSPDRV DAFAMGDKTP DASVRTYTDH MRETALQREK EETMRLIAKK KKEEEEAAAK HQKDSAPPPP ASSSSSSSKR RHRWDLPEED
0201: GAAAKKAKAA SSDWDLPDAA PGIGRWDAPT PGRVSDATPS AGRRNRWDET PTPGRVTDSD ATPGGGVTPG ATPSGVTWDG LATPTPKRQR SRWDETPATM
0301: GSATPMGGVT PGAAYTPGVT PIGGIDMATP TPGQLIFRGP MTPEQLNMQR WEKDIEERNR PLSDEELDAM FPKDGYKVLD PPATYVPIRT PARKLQQTPT
0401: PMATPGYVIP EENRGQQYDV PPEVPGGLPF MKPEDYQYFG SLLNEENEEE LSPEEQKERK IMKLLLKVKN GTPPQRKTAL RQLTDKAREL GAGPLFNKIL
0501: PLLMQPTLED QERHLLVKVI DRILYKLDEM VRPYVHKILV VIEPLLIDED YYARVEGREI ISNLSKAAGL ASMIAAMRPD IDNIDEYVRN TTARAFSVVA
0601: SALGIPALLP FLKAVCQSKR SWQARHTGIK IVQQIAILIG CAVLPHLRSL VEIIEHGLSD ENQKVRTITA LSLAALAEAA APYGIESFDS VLKPLWKGIR
0701: SHRGKVLAAF LKAIGFIIPL MDAIYASYYT KEVMVILIRE FQSPDEEMKK IVLKVVKQCV STEGVEPEYI RSDILPEFFR NFWTRKMALE RRNYKQLVET
0801: TVEVANKVGV ADIVGRVVED LKDESEQYRR MVMETIDKVV TNLGASDIDA RLEELLIDGI LYAFQEQTSD DANVMLNGFG AVVNALGQRV KPYLPQICGT
0901: IKWRLNNKSA KVRQQAADLI SRIAVVMKQC GEEQLMGHLG VVLYEYLGEE YPEVLGSILG ALKAIVNVIG MTKMTPPIKD LLPRLTPILK NRHEKVQENC
1001: IDLVGRIADR GAEFVPAREW MRICFELLEM LKAHKKGIRR ATVNTFGYIA KAIGPQDVLA TLLNNLKVQE RQNRVCTTVA IAIVAETCSP FTVLPALMNE
1101: YRVPELNVQN GVLKSLSFLF EYIGEMGKDY IYAVTPLLED ALMDRDLVHR QTAASAVKHM ALGVAGLGCE DALVHLLNFI WPNIFETSPH VINAVMEAIE
1201: GMRVALGAAV ILNYCLQGLF HPARKVREVY WKIYNSLYIG AQDTLVAAYP VLEDEQNNVY SRPELTMFV

Arabidopsis Description

Nuclear protein-like [Source:UniProtKB/TrEMBL;Acc:Q9FMF9]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.