Factsheet for Os02t0146400-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400094070	Potato	mitochondrion	58.66	71.92
HORVU7Hr1G022470.3	Barley	cytosol	80.17	56.16
HORVU6Hr1G065110.1	Barley	cytosol	78.49	54.14
PGSC0003DMT400023774	Potato	cytosol	44.13	52.32
GSMUA_Achr10P...	Banana	nucleus	65.36	30.55
KRH21266	Soybean	nucleus	96.37	30.03
EES04510	Sorghum	cytosol, nucleus, plasma membrane	98.88	27.66
Zm00001d053882_P001	Maize	plastid	98.6	27.58
TraesCS6D01G104700.1	Wheat	nucleus	98.32	27.46
TraesCS6B01G143700.1	Wheat	cytosol, nucleus, plasma membrane	98.32	27.46
TraesCS6A01G115900.1	Wheat	golgi	98.32	27.46
HORVU6Hr1G020850.3	Barley	cytosol, nucleus, plasma membrane	98.32	27.44
Bra024281.1-P	Field mustard	nucleus	94.69	27.23
Bra037770.1-P	Field mustard	cytosol, nucleus, plasma membrane	96.37	27.21
AT5G64270.1	Thale cress	cytosol, nucleus, plasma membrane	96.37	27.19
KXG31550	Sorghum	cytosol, nucleus, plasma membrane	97.21	27.04
Zm00001d015248_P018	Maize	cytosol, nucleus, plasma membrane	98.88	26.98
Os02t0478900-00	Rice	nucleus	69.83	26.97
TraesCS5B01G017300.1	Wheat	cytosol, nucleus, plasma membrane	96.37	26.74
TraesCS5D01G025300.1	Wheat	nucleus	80.17	23.41
KRH11024	Soybean	nucleus	47.49	16.5
Os02t0147300-01	Rice	nucleus	1.4	2.7
Solyc07g041790.1.1	Tomato	cytosol, nucleus	0.0	0.0
VIT_19s0015g00400.t01	Wine grape	cytosol	0.0	0.0
VIT_19s0015g00420.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.25.10.10	MapMan:16.4.1.2.4.1	InterPro:ARM-like	InterPro:ARM-type_fold	ProteinID:BAF07790.1	ProteinID:BAS76961.1
GO:GO:0000245	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	InterPro:IPR011989
EnsemblPlantsGene:Os02g0146400	EnsemblPlants:Os02t0146400-01	PANTHER:PTHR12097	UniProt:Q0E3Z8	InterPro:SF3b_su1-like	SUPFAM:SSF48371
UniParc:UPI0000DF054E	:	:	:	:	:

Description

Similar to Splicing factor 3B subunit 1 (Spliceosome associated protein 155) (SAP 155) (SF3b155) (Pre-mRNA splicing factor SF3b 155 kDa subunit). (Os02t0146400-01);Similar to predicted protein. (Os02t0146400-02)

Coordinates

chr2:+:2548758..2551064

Molecular Weight (calculated)

39968.2 Da

IEP (calculated)

6.314

GRAVY (calculated)

0.172

Length

358 amino acids

Sequence
(BLAST)

001: VRQQAADLIS RIAIVMKQCQ EEQLMGHLGV VLYEYLGEEY PEVLGSILGA LKAIVNVIGM TKMTPPIKDL LPRLTPILKN RHEKVQENCI DLVGRIADRG
101: AEFVPAREWM RICFELLEML KAHKKGIRRA TVNTFGYIAK AIGPQDVLAT LLNNLKVQER QNRVCTTVAI AIVAETCSPF TVLPALMNEY RVPELNVQNG
201: VLKSLSFLFE YIGEMGKDYI YAVTPLLEDA LMDRDLVHRQ TAASAVKHMA LGVAGLGCED ALVHLLNYVW PNIFETSPHV INAVMEAIEG MRVALGPAVI
301: LNYCLQGLFH PARKVREVYW KIYNSLYIGA QDALVAAYPA LDDDGDNIYS RPELAMFV

Best Arabidopsis Sequence Match ( AT5G64270.1 )
(BLAST)

0001: MADLDPEIAK TQEERRKMEA DLASLTSLTF DRDLYGGNDR ASYSTSIAPN EEDDANLDTT GSLVAQRLAS YTAPRSILND VARPHNEDDD VGFKPRQSIA
0101: EREGEYRNRR LNRVLSPDRV DAFAMGDKTP DASVRTYTDH MRETALQREK EETMRLIAKK KKEEEEAAAK HQKDSAPPPP ASSSSSSSKR RHRWDLPEED
0201: GAAAKKAKAA SSDWDLPDAA PGIGRWDAPT PGRVSDATPS AGRRNRWDET PTPGRVTDSD ATPGGGVTPG ATPSGVTWDG LATPTPKRQR SRWDETPATM
0301: GSATPMGGVT PGAAYTPGVT PIGGIDMATP TPGQLIFRGP MTPEQLNMQR WEKDIEERNR PLSDEELDAM FPKDGYKVLD PPATYVPIRT PARKLQQTPT
0401: PMATPGYVIP EENRGQQYDV PPEVPGGLPF MKPEDYQYFG SLLNEENEEE LSPEEQKERK IMKLLLKVKN GTPPQRKTAL RQLTDKAREL GAGPLFNKIL
0501: PLLMQPTLED QERHLLVKVI DRILYKLDEM VRPYVHKILV VIEPLLIDED YYARVEGREI ISNLSKAAGL ASMIAAMRPD IDNIDEYVRN TTARAFSVVA
0601: SALGIPALLP FLKAVCQSKR SWQARHTGIK IVQQIAILIG CAVLPHLRSL VEIIEHGLSD ENQKVRTITA LSLAALAEAA APYGIESFDS VLKPLWKGIR
0701: SHRGKVLAAF LKAIGFIIPL MDAIYASYYT KEVMVILIRE FQSPDEEMKK IVLKVVKQCV STEGVEPEYI RSDILPEFFR NFWTRKMALE RRNYKQLVET
0801: TVEVANKVGV ADIVGRVVED LKDESEQYRR MVMETIDKVV TNLGASDIDA RLEELLIDGI LYAFQEQTSD DANVMLNGFG AVVNALGQRV KPYLPQICGT
0901: IKWRLNNKSA KVRQQAADLI SRIAVVMKQC GEEQLMGHLG VVLYEYLGEE YPEVLGSILG ALKAIVNVIG MTKMTPPIKD LLPRLTPILK NRHEKVQENC
1001: IDLVGRIADR GAEFVPAREW MRICFELLEM LKAHKKGIRR ATVNTFGYIA KAIGPQDVLA TLLNNLKVQE RQNRVCTTVA IAIVAETCSP FTVLPALMNE
1101: YRVPELNVQN GVLKSLSFLF EYIGEMGKDY IYAVTPLLED ALMDRDLVHR QTAASAVKHM ALGVAGLGCE DALVHLLNFI WPNIFETSPH VINAVMEAIE
1201: GMRVALGAAV ILNYCLQGLF HPARKVREVY WKIYNSLYIG AQDTLVAAYP VLEDEQNNVY SRPELTMFV

Arabidopsis Description

Nuclear protein-like [Source:UniProtKB/TrEMBL;Acc:Q9FMF9]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.