Factsheet for Solyc07g041790.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0015g00420.t01	Wine grape	cytosol	36.99	33.75
VIT_19s0015g00400.t01	Wine grape	cytosol	34.25	32.05
PGSC0003DMT400023774	Potato	cytosol	87.67	21.19
HORVU6Hr1G065110.1	Barley	cytosol	87.67	12.33
HORVU7Hr1G022470.3	Barley	cytosol	84.93	12.13
CDX84511	Canola	cytosol	82.19	10.93
GSMUA_Achr10P...	Banana	nucleus	87.67	8.36
CDY43804	Canola	cytosol, peroxisome, plasma membrane	79.45	6.91
Os02t0478900-00	Rice	nucleus	71.23	5.61
TraesCS5D01G025300.1	Wheat	nucleus	86.3	5.14
Zm00001d053882_P001	Maize	plastid	87.67	5.0
EES04510	Sorghum	cytosol, nucleus, plasma membrane	87.67	5.0
TraesCS6A01G115900.1	Wheat	golgi	87.67	4.99
TraesCS6B01G143700.1	Wheat	cytosol, nucleus, plasma membrane	87.67	4.99
TraesCS6D01G104700.1	Wheat	nucleus	87.67	4.99
HORVU6Hr1G020850.3	Barley	cytosol, nucleus, plasma membrane	87.67	4.99
TraesCS5B01G017300.1	Wheat	cytosol, nucleus, plasma membrane	87.67	4.96
KXG31550	Sorghum	cytosol, nucleus, plasma membrane	86.3	4.9
Zm00001d015248_P018	Maize	cytosol, nucleus, plasma membrane	87.67	4.88
CDX84509	Canola	plastid	2.74	0.63
Solyc10g081290.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	1.37	0.48
Os02t0146400-01	Rice	cytosol, nucleus	0.0	0.0
Solyc10g081070.1.1	Tomato	nucleus	0.0	0.0
Solyc10g081090.1.1	Tomato	nucleus	0.0	0.0
CDY43803	Canola	nucleus	0.0	0.0
CDX84510	Canola	nucleus, peroxisome, plasma membrane	0.0	0.0

Protein Annotations

MapMan:35.2	GO:GO:0000245	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005686
GO:GO:0005689	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043
GO:GO:0071004	GO:GO:0071013	UniProt:K4CE46	PANTHER:PTHR12097	InterPro:SF3b_su1-like	EnsemblPlantsGene:Solyc07g041790.1
EnsemblPlants:Solyc07g041790.1.1	UniParc:UPI000276BBFA	:	:	:	:

Description

No Description!

Coordinates

chr7:+:54151257..54151478

Molecular Weight (calculated)

8164.1 Da

IEP (calculated)

4.126

GRAVY (calculated)

0.301

Length

73 amino acids

Sequence
(BLAST)

1: MVMETIEKVI VNLGASDIDS RLEELLIDGI LYAFQEQIMN DDANVMLNEF GIVVNALGQR VKPYLPHICG TIK

Best Arabidopsis Sequence Match ( AT5G64270.1 )
(BLAST)

0001: MADLDPEIAK TQEERRKMEA DLASLTSLTF DRDLYGGNDR ASYSTSIAPN EEDDANLDTT GSLVAQRLAS YTAPRSILND VARPHNEDDD VGFKPRQSIA
0101: EREGEYRNRR LNRVLSPDRV DAFAMGDKTP DASVRTYTDH MRETALQREK EETMRLIAKK KKEEEEAAAK HQKDSAPPPP ASSSSSSSKR RHRWDLPEED
0201: GAAAKKAKAA SSDWDLPDAA PGIGRWDAPT PGRVSDATPS AGRRNRWDET PTPGRVTDSD ATPGGGVTPG ATPSGVTWDG LATPTPKRQR SRWDETPATM
0301: GSATPMGGVT PGAAYTPGVT PIGGIDMATP TPGQLIFRGP MTPEQLNMQR WEKDIEERNR PLSDEELDAM FPKDGYKVLD PPATYVPIRT PARKLQQTPT
0401: PMATPGYVIP EENRGQQYDV PPEVPGGLPF MKPEDYQYFG SLLNEENEEE LSPEEQKERK IMKLLLKVKN GTPPQRKTAL RQLTDKAREL GAGPLFNKIL
0501: PLLMQPTLED QERHLLVKVI DRILYKLDEM VRPYVHKILV VIEPLLIDED YYARVEGREI ISNLSKAAGL ASMIAAMRPD IDNIDEYVRN TTARAFSVVA
0601: SALGIPALLP FLKAVCQSKR SWQARHTGIK IVQQIAILIG CAVLPHLRSL VEIIEHGLSD ENQKVRTITA LSLAALAEAA APYGIESFDS VLKPLWKGIR
0701: SHRGKVLAAF LKAIGFIIPL MDAIYASYYT KEVMVILIRE FQSPDEEMKK IVLKVVKQCV STEGVEPEYI RSDILPEFFR NFWTRKMALE RRNYKQLVET
0801: TVEVANKVGV ADIVGRVVED LKDESEQYRR MVMETIDKVV TNLGASDIDA RLEELLIDGI LYAFQEQTSD DANVMLNGFG AVVNALGQRV KPYLPQICGT
0901: IKWRLNNKSA KVRQQAADLI SRIAVVMKQC GEEQLMGHLG VVLYEYLGEE YPEVLGSILG ALKAIVNVIG MTKMTPPIKD LLPRLTPILK NRHEKVQENC
1001: IDLVGRIADR GAEFVPAREW MRICFELLEM LKAHKKGIRR ATVNTFGYIA KAIGPQDVLA TLLNNLKVQE RQNRVCTTVA IAIVAETCSP FTVLPALMNE
1101: YRVPELNVQN GVLKSLSFLF EYIGEMGKDY IYAVTPLLED ALMDRDLVHR QTAASAVKHM ALGVAGLGCE DALVHLLNFI WPNIFETSPH VINAVMEAIE
1201: GMRVALGAAV ILNYCLQGLF HPARKVREVY WKIYNSLYIG AQDTLVAAYP VLEDEQNNVY SRPELTMFV

Arabidopsis Description

Nuclear protein-like [Source:UniProtKB/TrEMBL;Acc:Q9FMF9]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.