Factsheet for VIT_08s0040g00270.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

cytosol 2
nucleus 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400048954	Potato	mitochondrion	29.35	97.14
Solyc10g081090.1.1	Tomato	nucleus	9.44	94.49
KRH21266	Soybean	nucleus	84.19	93.12
PGSC0003DMT400072223	Potato	cytosol, nucleus, plasma membrane	89.3	90.15
KRH11024	Soybean	nucleus	71.99	88.83
CDX81218	Canola	cytosol, nucleus, plasma membrane	82.53	86.84
CDY18718	Canola	cytosol, nucleus, plasma membrane	84.26	86.79
Bra037770.1-P	Field mustard	cytosol, nucleus, plasma membrane	85.84	86.04
HORVU0Hr1G009840.1	Barley	cytosol, nucleus, plasma membrane	23.68	85.51
AT5G64270.1	Thale cress	cytosol, nucleus, plasma membrane	85.05	85.19
Solyc10g081070.1.1	Tomato	nucleus	45.48	84.5
VIT_19s0015g00400.t01	Wine grape	cytosol	5.04	82.05
Bra024281.1-P	Field mustard	nucleus	79.86	81.53
VIT_19s0015g00420.t01	Wine grape	cytosol	5.11	81.25

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100243186	wikigene:100243186	MapMan:16.4.1.2.4.1	InterPro:ARM-like	InterPro:ARM-type_fold
ProteinID:CCB57161	ProteinID:CCB57161.1	ncoils:Coil	UniProt:F6HQT0	EMBL:FN596008	GO:GO:0000245
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005686	GO:GO:0005689	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0071004	GO:GO:0071013
InterPro:HEAT_type_2	InterPro:IPR011989	InterPro:IPR021133	EntrezGene:LOC100243186	wikigene:LOC100243186	PFAM:PF08920
PFscan:PS50077	PANTHER:PTHR12097	InterPro:SF3b_su1	InterPro:SF3b_su1-like	SMART:SM01349	SUPFAM:SSF48371
InterPro:TOG	UniParc:UPI0001983CB2	ArrayExpress:VIT_08s0040g00270	EnsemblPlantsGene:VIT_08s0040g00270	EnsemblPlants:VIT_08s0040g00270.t01	unigene:Vvi.22824
RefSeq:XP_002284022	RefSeq:XP_002284022.1	RefSeq:XP_010653681.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr8:-:11213199..11217147

Molecular Weight (calculated)

142067.0 Da

IEP (calculated)

5.822

GRAVY (calculated)

-0.294

Length

1271 amino acids

Sequence
(BLAST)

0001: MASIDPEIAR TQEERKKMEQ QLSSLTSVNY DPELYGGTNK FEDYVSSIPV NDEEENVDAM DPGLGRRLPS YTAPASLLKE MPRGGVEEDD MGFKKPQRII
0101: DREDDYRRRR LNRVISPDRH DAFASGDKTP DVSVRTYADV MREEALKREK EETLKAIAKK KKEEEEAKEQ EKETGGGAVQ QPTQKRRNRW DQSQDDGSAK
0201: KAKTGSDWDL PDSTPGIGRW DATPTPGRVA DATPSISRRN RWDETPTPGR LADADATPAA GGATPGATPA GMTWDATPKL AGLATPTPKR QRSRWDETPA
0301: TMGSATPMAG ATPAAAYTPG VTPVGGVELA TPTPSAINLR GAITPEQYNL LRWEKDIEER NRPLTDEELD AMFPQEGYKI LDPPPSYVPI RTPARKLLAT
0401: PTPLGTPLYA IPEENRGQQF DVPKEAPGGL PFMKPEDYQY FGALLNDEDE EELSPEEQKE RKIMKLLLKV KNGTPPQRKT ALRQLTDKAR EFGAGPLFNR
0501: ILPLLMQPTL EDQERHLLVK VIDRVLYKLD ELVRPFVHKI LVVIEPLLID EDYYARVEGR EIISNLSKAA GLATMIAAMR PDIDNIDEYV RNTTARAFSV
0601: VASALGIPAL LPFLKAVCQS KKSWQARHTG IKIVQQIAIL IGCAVLPHLR SLVEIIEHGL NDENQKVRTI TALSLAALAE AAAPYGIESF DSVLKPLWKG
0701: IRSHRGKVLA AFLKAIGFII PLMDAIYASY YTKEVVFILI REFQSPDEEM KKIVLKVVKQ CVSTEGVEAD YIRNDILPEF FRNFWVRRMA LDRRNYRQLV
0801: DTTVEIANKV GVADIVGRIV EDLKDESEPY RRMVMETIEK VVANLGASDI DARLEELLID GILYAFQEQT SDDANVMLNG FGAVVNALGQ RVKPYLPQIC
0901: GTIKWRLNNK SAKVRQQAAD LISRIAVVMK QCHEEQLMGH LGVVLYEYLG EEYPEVLGSI LGALKAIVNV IGMTKMTPPI KDLLPRLTPI LKNRHEKVQE
1001: NCIDLVGRIA DRGAEFVPAR EWMRICFELL EMLKAHKKGI RRATVNTFGY IAKAIGPQDV LATLLNNLKV QERQNRVCTT VAIAIVAETC SPFTVLPALM
1101: NEYRVPELNV QNGVLKSLSF LFEYIGEMGK DYIYAVTPLL EDALMDRDLV HRQTAASAVK HMALGVAGLG CEDALVHLMN YVWPNIFETS PHVINAVMEA
1201: IEGMRVALGA AVVLNYCLQG LFHPARKVRE VYWKIYNSLY IGAQDALVAA YPLLEDEQNN IYSRPELVMF I

Best Arabidopsis Sequence Match ( AT5G64270.1 )
(BLAST)

0001: MADLDPEIAK TQEERRKMEA DLASLTSLTF DRDLYGGNDR ASYSTSIAPN EEDDANLDTT GSLVAQRLAS YTAPRSILND VARPHNEDDD VGFKPRQSIA
0101: EREGEYRNRR LNRVLSPDRV DAFAMGDKTP DASVRTYTDH MRETALQREK EETMRLIAKK KKEEEEAAAK HQKDSAPPPP ASSSSSSSKR RHRWDLPEED
0201: GAAAKKAKAA SSDWDLPDAA PGIGRWDAPT PGRVSDATPS AGRRNRWDET PTPGRVTDSD ATPGGGVTPG ATPSGVTWDG LATPTPKRQR SRWDETPATM
0301: GSATPMGGVT PGAAYTPGVT PIGGIDMATP TPGQLIFRGP MTPEQLNMQR WEKDIEERNR PLSDEELDAM FPKDGYKVLD PPATYVPIRT PARKLQQTPT
0401: PMATPGYVIP EENRGQQYDV PPEVPGGLPF MKPEDYQYFG SLLNEENEEE LSPEEQKERK IMKLLLKVKN GTPPQRKTAL RQLTDKAREL GAGPLFNKIL
0501: PLLMQPTLED QERHLLVKVI DRILYKLDEM VRPYVHKILV VIEPLLIDED YYARVEGREI ISNLSKAAGL ASMIAAMRPD IDNIDEYVRN TTARAFSVVA
0601: SALGIPALLP FLKAVCQSKR SWQARHTGIK IVQQIAILIG CAVLPHLRSL VEIIEHGLSD ENQKVRTITA LSLAALAEAA APYGIESFDS VLKPLWKGIR
0701: SHRGKVLAAF LKAIGFIIPL MDAIYASYYT KEVMVILIRE FQSPDEEMKK IVLKVVKQCV STEGVEPEYI RSDILPEFFR NFWTRKMALE RRNYKQLVET
0801: TVEVANKVGV ADIVGRVVED LKDESEQYRR MVMETIDKVV TNLGASDIDA RLEELLIDGI LYAFQEQTSD DANVMLNGFG AVVNALGQRV KPYLPQICGT
0901: IKWRLNNKSA KVRQQAADLI SRIAVVMKQC GEEQLMGHLG VVLYEYLGEE YPEVLGSILG ALKAIVNVIG MTKMTPPIKD LLPRLTPILK NRHEKVQENC
1001: IDLVGRIADR GAEFVPAREW MRICFELLEM LKAHKKGIRR ATVNTFGYIA KAIGPQDVLA TLLNNLKVQE RQNRVCTTVA IAIVAETCSP FTVLPALMNE
1101: YRVPELNVQN GVLKSLSFLF EYIGEMGKDY IYAVTPLLED ALMDRDLVHR QTAASAVKHM ALGVAGLGCE DALVHLLNFI WPNIFETSPH VINAVMEAIE
1201: GMRVALGAAV ILNYCLQGLF HPARKVREVY WKIYNSLYIG AQDTLVAAYP VLEDEQNNVY SRPELTMFV

Arabidopsis Description

Nuclear protein-like [Source:UniProtKB/TrEMBL;Acc:Q9FMF9]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.