Factsheet for Solyc06g053800.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400041978	Potato	cytosol	95.25	94.13
Solyc11g011780.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	77.23	77.69
KRH03172	Soybean	cytosol, endoplasmic reticulum	69.9	77.41
KRH30911	Soybean	cytosol	78.02	77.25
KRG97977	Soybean	cytosol	77.43	76.67
VIT_04s0043g00250.t01	Wine grape	golgi	81.78	67.26
CDY39255	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	65.74	65.35
CDY07477	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	65.35	64.96
AT2G03820.1	Thale cress	cytosol	66.14	64.73
VIT_08s0007g08810.t01	Wine grape	cytosol	66.53	64.49
GSMUA_Achr3P21620_001	Banana	cytosol	24.55	63.92
Bra004140.1-P	Field mustard	cytosol	65.35	63.83
CDY22138	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	64.16	63.65
Bra040033.1-P	Field mustard	cytosol	63.17	62.67
HORVU1Hr1G050300.1	Barley	cytosol, mitochondrion	6.14	57.41
TraesCS1A01G192300.1	Wheat	plastid	56.83	55.09
TraesCS1D01G195700.1	Wheat	unclear	56.83	55.09
TraesCS1B01G207100.1	Wheat	plastid	56.44	55.02
EER91888	Sorghum	plastid	56.63	54.48
Zm00001d047039_P001	Maize	cytosol, nucleus, plastid, vacuole	55.84	53.71
Zm00001d030040_P001	Maize	extracellular	55.84	53.71
Os10t0573900-01	Rice	nucleus	54.85	52.96
VIT_08s0007g08820.t01	Wine grape	extracellular	6.93	44.87
TraesCS3B01G558700.1	Wheat	cytosol, plastid	40.79	43.19
TraesCS3D01G503800.1	Wheat	plastid	38.61	43.14
TraesCS3B01G558900.1	Wheat	cytosol, plastid	40.2	42.56
TraesCS3A01G496100.1	Wheat	cytosol, plastid	40.2	42.56
OQU88218	Sorghum	plastid	35.84	38.59
Zm00001d011822_P001	Maize	cytosol	25.35	31.6

Protein Annotations

EnsemblPlants:Solyc06g053800.1.1	EnsemblPlantsGene:Solyc06g053800.1	GO:GO:0000055	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006810	GO:GO:0008150
GO:GO:0015031	GO:GO:0043023	InterPro:NMD3	ncoils:Coil	PANTHER:PTHR12746	PFAM:PF04981
SEG:seg	UniParc:UPI0002765762	UniProt:K4C667	MapMan:17.1.2.2.2.5	:	:

Description

No Description!

Coordinates

chr6:-:36658540..36660057

Molecular Weight (calculated)

57994.4 Da

IEP (calculated)

6.397

GRAVY (calculated)

-0.405

Length

505 amino acids

Sequence
(BLAST)

001: MFTVHHTIGN VLCCKCGISM QPNAANMCAN CLRSEIDITE GLQKHVIICH CPECDSYLQP PRTWIKAQLE SKELLTFCVK RLKNLNKVRL VQAEFIWTEP
101: HSKRIKVKLK VQKEVLHGAI LEQAYTVEFV IQDQMCEACT RVQANPDQWI AAVQLRQHVT HRRTFFYLEQ LILKHDAASR AIMIKQMDQG IDFFFSNRSH
201: AVKFVEFIGK VVPSRSRNDK QLVSHDPKSN NYNYKYTFSV EISPVCREDL ICLPPKVSNS LGNLGPLVIC TKVSNHIALL DPLTLRNCFL DAEQYWRASF
301: KSLLTSRQLV EYIVLDIEAV SSEVNIGGSK YALADAQVAR ISDFGKNDTI FNIRTHLGHI LNPGDNALGY DLYAANSNDS ELDKYKGFVL PDVILVKKSY
401: EEKWQKKRGK PRSWKLKSLN MEIDDNVKGR DDEEKKENEY EIFLRDIEEN ADMRFRISLY RNKEYQPSEM ASVTDDDDAP SVPLEELLAD LDLSEAEDDN
501: DSMRE

Best Arabidopsis Sequence Match ( AT2G03820.1 )
(BLAST)

001: MSVMDESGMF NVQQTIGSVL CCKCGVPMAP NAANMCVNCL RSEVDITEGL QKSIQIFYCP ECTCYLQPPK TWIKCQWESK ELLTFCIKRL KNLNKVKLKN
101: AEFVWTEPHS KRIKVKLTVQ AEVLNGAVLE QSYPVEYTVR DNLCESCSRF QANPDQWVAS IQLRQHVSHR RTFFYLEQLI LRHDAASRAI RIQQVDQGID
201: FFFGNKSHAN SFVEFLRKVV PIEYRQDQQL VSHDVKSSLY NYKYTYSVKI CPVCREDLVC LPSKVASGLG NLGPLVVCTK VSDNITLLDP RTLRCAFLDA
301: RQYWRSGFRS ALTSRQLVKY FVFDVEPPVG EATVGGQKYA LSYVQIARES DIGKMFYVQT HLGHILKPGD QALGYDIYGA NVNDNEMEKY RLSVKNGLPE
401: AILIKKCYEE QRERKQKKSR NWKLKSLPME MDDSRGRVDP EKTDKEYEEF LRDLEENPEL RFNISLYRDK DYQASETASM TDGEGAPSVP IEELLADLDL
501: SFEEEDDDDE DDMAAE

Arabidopsis Description

Nonsense-mediated mRNA decay NMD3 family protein [Source:UniProtKB/TrEMBL;Acc:Q9SI58]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.