Factsheet for Solyc11g011780.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, mitochondrion, plastid, cytosol, plasma membrane, golgi

Predictor Summary:

nucleus 2
plastid 2
mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, plastid, secretory
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	mitochondrion
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400034496	Potato	cytosol	98.21	96.48
Solyc06g053800.1.1	Tomato	cytosol	77.69	77.23
KRH03172	Soybean	cytosol, endoplasmic reticulum	68.13	75.0
KRH30911	Soybean	cytosol	74.7	73.53
KRG97977	Soybean	cytosol	74.3	73.14
CDY07477	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	64.94	64.17
AT2G03820.1	Thale cress	cytosol	65.94	64.15
CDY39255	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	64.54	63.78
GSMUA_Achr3P21620_001	Banana	cytosol	24.5	63.4
Bra004140.1-P	Field mustard	cytosol	64.94	63.06
VIT_04s0043g00250.t01	Wine grape	golgi	75.7	61.89
CDY22138	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	62.35	61.49
Bra040033.1-P	Field mustard	cytosol	61.75	60.9
VIT_08s0007g08810.t01	Wine grape	cytosol	62.75	60.46
HORVU1Hr1G050300.1	Barley	cytosol, mitochondrion	6.37	59.26
TraesCS1B01G207100.1	Wheat	plastid	54.38	52.7
TraesCS1A01G192300.1	Wheat	plastid	54.58	52.59
TraesCS1D01G195700.1	Wheat	unclear	54.58	52.59
Os10t0573900-01	Rice	nucleus	53.78	51.63
EER91888	Sorghum	plastid	53.59	51.24
Zm00001d030040_P001	Maize	extracellular	53.19	50.86
Zm00001d047039_P001	Maize	cytosol, nucleus, plastid, vacuole	52.79	50.48
VIT_08s0007g08820.t01	Wine grape	extracellular	6.77	43.59
TraesCS3B01G558700.1	Wheat	cytosol, plastid	40.04	42.14
TraesCS3D01G503800.1	Wheat	plastid	37.65	41.81
TraesCS3B01G558900.1	Wheat	cytosol, plastid	39.44	41.51
TraesCS3A01G496100.1	Wheat	cytosol, plastid	39.04	41.09
OQU88218	Sorghum	plastid	35.86	38.38
Zm00001d011822_P001	Maize	cytosol	24.3	30.12

Protein Annotations

EnsemblPlants:Solyc11g011780.1.1	EnsemblPlantsGene:Solyc11g011780.1	GO:GO:0000055	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006810	GO:GO:0008150
GO:GO:0015031	GO:GO:0043023	InterPro:NMD3	ncoils:Coil	PANTHER:PTHR12746	PFAM:PF04981
SEG:seg	UniParc:UPI0002769C58	UniProt:K4D5Y3	MapMan:17.1.2.2.2.5	:	:

Description

No Description!

Coordinates

chr11:+:4775185..4776693

Molecular Weight (calculated)

57627.3 Da

IEP (calculated)

6.861

GRAVY (calculated)

-0.330

Length

502 amino acids

Sequence
(BLAST)

001: MFTVQQTIGN VLCCKCGISM QPNAANMCAK CLRSEVDITE DLQKHVVIIH CPECDGYLQP PRSWIKAQLE SKELLTFCIK KLKNLNKVKL VNTEFIWTEP
101: HSKRIKIRLK VQKEVLNGAV LEQSYIVEYV VQDQMCDPCS KVQVNPDQWV AAVQLRQHVS HRRTFFYLEQ LIIKHDAANR AIKIQQLDQG IDFFFGHRSH
201: ALKFVDFVSR MVLVRTRNAK QLASHDHKSN IVNYKYTFSV EISPVCREDL ICLPPKVAAS LGNIGPLVIC TKVSNSISLL DPFTLRHCFL DADQYWRASF
301: KPLLSSRQLV EYVVLDVDVV SEEVNIGGSK YVLADIQVAR VSDFGKNDTI FSVRTHLGHL LDAGDYALGY DLYRANSNDF ELEKYKGLVL PEVILIKKSY
401: EEKRQKKRGK PRSWKLKSLN MEIDNSGKGK DQEQKMNSEY EHFLRDLEEN PDMRFNISLY RDKEYQRSET TSVADGEDVP SIPLEELLAD IDLSDIDVEE
501: DA

Best Arabidopsis Sequence Match ( AT2G03820.1 )
(BLAST)

001: MSVMDESGMF NVQQTIGSVL CCKCGVPMAP NAANMCVNCL RSEVDITEGL QKSIQIFYCP ECTCYLQPPK TWIKCQWESK ELLTFCIKRL KNLNKVKLKN
101: AEFVWTEPHS KRIKVKLTVQ AEVLNGAVLE QSYPVEYTVR DNLCESCSRF QANPDQWVAS IQLRQHVSHR RTFFYLEQLI LRHDAASRAI RIQQVDQGID
201: FFFGNKSHAN SFVEFLRKVV PIEYRQDQQL VSHDVKSSLY NYKYTYSVKI CPVCREDLVC LPSKVASGLG NLGPLVVCTK VSDNITLLDP RTLRCAFLDA
301: RQYWRSGFRS ALTSRQLVKY FVFDVEPPVG EATVGGQKYA LSYVQIARES DIGKMFYVQT HLGHILKPGD QALGYDIYGA NVNDNEMEKY RLSVKNGLPE
401: AILIKKCYEE QRERKQKKSR NWKLKSLPME MDDSRGRVDP EKTDKEYEEF LRDLEENPEL RFNISLYRDK DYQASETASM TDGEGAPSVP IEELLADLDL
501: SFEEEDDDDE DDMAAE

Arabidopsis Description

Nonsense-mediated mRNA decay NMD3 family protein [Source:UniProtKB/TrEMBL;Acc:Q9SI58]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.