Subcellular Localization
min:
: max
Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, mitochondrion, plastid, cytosol, plasma membrane, golgi
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- mitochondrion 3
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY39255 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 98.62 | 98.62 |
| Bra004140.1-P | Field mustard | cytosol | 99.8 | 98.07 |
| CDY22138 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 89.17 | 89.0 |
| AT2G03820.1 | Thale cress | cytosol | 89.37 | 87.98 |
| HORVU1Hr1G050300.1 | Barley | cytosol, mitochondrion | 7.09 | 66.67 |
| Solyc06g053800.1.1 | Tomato | cytosol | 64.96 | 65.35 |
| Solyc11g011780.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 64.17 | 64.94 |
| KRH03172 | Soybean | cytosol, endoplasmic reticulum | 58.07 | 64.69 |
| PGSC0003DMT400041978 | Potato | cytosol | 64.76 | 64.38 |
| PGSC0003DMT400034496 | Potato | cytosol | 64.37 | 63.99 |
| KRG97977 | Soybean | cytosol | 63.98 | 63.73 |
| KRH30911 | Soybean | cytosol | 63.58 | 63.33 |
| GSMUA_Achr3P21620_001 | Banana | cytosol | 22.64 | 59.28 |
| TraesCS1A01G192300.1 | Wheat | plastid | 54.13 | 52.78 |
| TraesCS1D01G195700.1 | Wheat | unclear | 54.13 | 52.78 |
| TraesCS1B01G207100.1 | Wheat | plastid | 53.35 | 52.32 |
| EER91888 | Sorghum | plastid | 52.56 | 50.86 |
| Zm00001d030040_P001 | Maize | extracellular | 51.97 | 50.29 |
| Os10t0573900-01 | Rice | nucleus | 51.57 | 50.1 |
| Zm00001d047039_P001 | Maize | cytosol, nucleus, plastid, vacuole | 51.18 | 49.52 |
| TraesCS3B01G558700.1 | Wheat | cytosol, plastid | 39.17 | 41.72 |
| TraesCS3D01G503800.1 | Wheat | plastid | 36.81 | 41.37 |
| TraesCS3A01G496100.1 | Wheat | cytosol, plastid | 38.19 | 40.67 |
| TraesCS3B01G558900.1 | Wheat | cytosol, plastid | 37.99 | 40.46 |
| OQU88218 | Sorghum | plastid | 33.86 | 36.67 |
| VIT_08s0007g08500.t01 | Wine grape | cytosol | 25.0 | 34.14 |
| Zm00001d011822_P001 | Maize | cytosol | 23.82 | 29.88 |
Protein Annotations
| EnsemblPlants:CDY07477 | EnsemblPlantsGene:GSBRNA2T00124478001 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005737 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015031 | InterPro:NMD3 | ncoils:Coil |
| PANTHER:PTHR12746 | PFAM:PF04981 | ProteinID:CDY07477 | ProteinID:CDY07477.1 | SEG:seg | UniParc:UPI0004EEA414 |
| UniProt:A0A078F352 | MapMan:17.1.2.2.2.5 | : | : | : | : |
Description
BnaA07g25560DBnaA07g25560D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F352]
Coordinates
chrLK031978:-:891788..893783
Molecular Weight (calculated)
58405.7 Da
IEP (calculated)
5.252
GRAVY (calculated)
-0.476
Length
508 amino acids
Sequence
(BLAST)
(BLAST)
001: MFKVQQTIGS VLCCKCGVPM PPNAANMCVN CLRSEVDITE GLQKSIQIFY CPECGCYLQP PKTWIKAQWE SKELLTFCIK RLKNLNKVKL KNAEFVWTEP
101: HSKRIKIKLT VQAEVLNGAV LEQSYPVEYT VRDNLCESCS RFQANPDQWV ASVQLRQHVS HRRTFFYLEQ LILRHDAASR AIRIQQVDQG IDFFFGNKSH
201: ANSFIEFLRK VVPIEYRQDQ QLVSHDVKSS LYNYKYTYSV KICPICREDL ICLPSKVASG LGNLGPLVVC TKVSDNITIL DPRTLRCAFL DARQYFRSGF
301: RSALTSRQLV KYFVFDVEEP VGEATVGGQK YALSYVQIAR ESDLGNMFYV QTHLGHILKS GDQALGYDIY GANVNDDEME KYRLSVKNGL PEAILIKKCY
401: DEQRERKRGK PRAFTTKKLP MEMDESRGGR VDPEKMENEY EEFLRDLEEN PELRFNISLY KNKDYQESET ASMTDGEGAP TVPIEELLAE LELSEEEEEG
501: DDEEDMDE
101: HSKRIKIKLT VQAEVLNGAV LEQSYPVEYT VRDNLCESCS RFQANPDQWV ASVQLRQHVS HRRTFFYLEQ LILRHDAASR AIRIQQVDQG IDFFFGNKSH
201: ANSFIEFLRK VVPIEYRQDQ QLVSHDVKSS LYNYKYTYSV KICPICREDL ICLPSKVASG LGNLGPLVVC TKVSDNITIL DPRTLRCAFL DARQYFRSGF
301: RSALTSRQLV KYFVFDVEEP VGEATVGGQK YALSYVQIAR ESDLGNMFYV QTHLGHILKS GDQALGYDIY GANVNDDEME KYRLSVKNGL PEAILIKKCY
401: DEQRERKRGK PRAFTTKKLP MEMDESRGGR VDPEKMENEY EEFLRDLEEN PELRFNISLY KNKDYQESET ASMTDGEGAP TVPIEELLAE LELSEEEEEG
501: DDEEDMDE
001: MSVMDESGMF NVQQTIGSVL CCKCGVPMAP NAANMCVNCL RSEVDITEGL QKSIQIFYCP ECTCYLQPPK TWIKCQWESK ELLTFCIKRL KNLNKVKLKN
101: AEFVWTEPHS KRIKVKLTVQ AEVLNGAVLE QSYPVEYTVR DNLCESCSRF QANPDQWVAS IQLRQHVSHR RTFFYLEQLI LRHDAASRAI RIQQVDQGID
201: FFFGNKSHAN SFVEFLRKVV PIEYRQDQQL VSHDVKSSLY NYKYTYSVKI CPVCREDLVC LPSKVASGLG NLGPLVVCTK VSDNITLLDP RTLRCAFLDA
301: RQYWRSGFRS ALTSRQLVKY FVFDVEPPVG EATVGGQKYA LSYVQIARES DIGKMFYVQT HLGHILKPGD QALGYDIYGA NVNDNEMEKY RLSVKNGLPE
401: AILIKKCYEE QRERKQKKSR NWKLKSLPME MDDSRGRVDP EKTDKEYEEF LRDLEENPEL RFNISLYRDK DYQASETASM TDGEGAPSVP IEELLADLDL
501: SFEEEDDDDE DDMAAE
101: AEFVWTEPHS KRIKVKLTVQ AEVLNGAVLE QSYPVEYTVR DNLCESCSRF QANPDQWVAS IQLRQHVSHR RTFFYLEQLI LRHDAASRAI RIQQVDQGID
201: FFFGNKSHAN SFVEFLRKVV PIEYRQDQQL VSHDVKSSLY NYKYTYSVKI CPVCREDLVC LPSKVASGLG NLGPLVVCTK VSDNITLLDP RTLRCAFLDA
301: RQYWRSGFRS ALTSRQLVKY FVFDVEPPVG EATVGGQKYA LSYVQIARES DIGKMFYVQT HLGHILKPGD QALGYDIYGA NVNDNEMEKY RLSVKNGLPE
401: AILIKKCYEE QRERKQKKSR NWKLKSLPME MDDSRGRVDP EKTDKEYEEF LRDLEENPEL RFNISLYRDK DYQASETASM TDGEGAPSVP IEELLADLDL
501: SFEEEDDDDE DDMAAE
Arabidopsis Description
Nonsense-mediated mRNA decay NMD3 family protein [Source:UniProtKB/TrEMBL;Acc:Q9SI58]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.