CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH30911	Soybean	cytosol	98.04	98.04
KRH03172	Soybean	cytosol, endoplasmic reticulum	86.67	96.93
PGSC0003DMT400041978	Potato	cytosol	77.84	77.69
Solyc06g053800.1.1	Tomato	cytosol	76.67	77.43
PGSC0003DMT400034496	Potato	cytosol	74.9	74.76
Solyc11g011780.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	73.14	74.3
AT2G03820.1	Thale cress	cytosol	65.69	64.92
GSMUA_Achr3P21620_001	Banana	cytosol	24.51	64.43
CDY07477	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	63.73	63.98
CDY39255	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	63.73	63.98
Bra004140.1-P	Field mustard	cytosol	64.31	63.44
CDY22138	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	62.94	63.06
Bra040033.1-P	Field mustard	cytosol	61.96	62.08
HORVU1Hr1G050300.1	Barley	cytosol, mitochondrion	6.27	59.26
TraesCS1A01G192300.1	Wheat	plastid	55.88	54.7
TraesCS1D01G195700.1	Wheat	unclear	55.69	54.51
TraesCS1B01G207100.1	Wheat	plastid	55.1	54.25
EER91888	Sorghum	plastid	55.1	53.52
Zm00001d030040_P001	Maize	extracellular	54.51	52.95
Os10t0573900-01	Rice	nucleus	54.12	52.77
Zm00001d047039_P001	Maize	cytosol, nucleus, plastid, vacuole	53.73	52.19
VIT_08s0007g08820.t01	Wine grape	extracellular	7.65	50.0
TraesCS3B01G558700.1	Wheat	cytosol, plastid	39.8	42.56
TraesCS3D01G503800.1	Wheat	plastid	37.65	42.48
TraesCS3A01G496100.1	Wheat	cytosol, plastid	39.02	41.72
TraesCS3B01G558900.1	Wheat	cytosol, plastid	39.02	41.72
OQU88218	Sorghum	plastid	35.29	38.38
Zm00001d011822_P001	Maize	cytosol	25.49	32.1

Protein Annotations

MapMan:17.1.2.2.2.5	EMBL:ACUP02010833	EnsemblPlantsGene:GLYMA_18G042700	GO:GO:0000055	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006810
GO:GO:0008150	GO:GO:0015031	GO:GO:0043023	UniProt:K7MPV2	EnsemblPlants:KRG97977	ProteinID:KRG97977
ProteinID:KRG97977.1	ProteinID:KRG97978.1	InterPro:NMD3	PFAM:PF04981	PANTHER:PTHR12746	UniParc:UPI000233F142
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:-:3608015..3610350

Molecular Weight (calculated)

58380.0 Da

IEP (calculated)

6.817

GRAVY (calculated)

-0.416

Length

510 amino acids

Sequence
(BLAST)

001: MFGSSGMAQE SGMFMVSQTI GSVLCCKCGI PMQPNAANMC VKCLRSEVDI TEGLLKRLVL VHCPECESYL QPPRSWVKLQ LESKELLTFC LKKLQKNLNS
101: NKVRLVHAEF IWTEPHSRRV KVKVKVQKEV LNGAILEQSY PVEYVQQEHM CESCSRVQAN PDQWVASVQL RQHVSHRRTF FYLEQLILKH GAAATAIRIK
201: QMEQGIDFFF SNRSHGVKFV EFIGKVAPVR SRHDKQLVSH DPKSNNYNYK YTFSVEISPI CREDLICLPP RVAAGLGNIG PLVICTKVTS SIALLDPFTL
301: RHCFIDADQY WRASFKSLLT SRQLVEYIVL DVETVSSEVT IGGTKYRLAD AQVARVSDFG KNDTIFNIKT HLGHLLNPGD YALGYDLYGA NSNDMEFDKY
401: KGHIPEAILI KKSYEEKHQK KRGKPRSWKL KSLEMEVDDK GRVDQDKMVS EYEQFIQDLE ENPEMRFNIS LYRNKEYKPS DGDDSSVPLE ELLADLDLSE
501: HEDEEDNMTE

Best Arabidopsis Sequence Match ( AT2G03820.1 )
(BLAST)

001: MSVMDESGMF NVQQTIGSVL CCKCGVPMAP NAANMCVNCL RSEVDITEGL QKSIQIFYCP ECTCYLQPPK TWIKCQWESK ELLTFCIKRL KNLNKVKLKN
101: AEFVWTEPHS KRIKVKLTVQ AEVLNGAVLE QSYPVEYTVR DNLCESCSRF QANPDQWVAS IQLRQHVSHR RTFFYLEQLI LRHDAASRAI RIQQVDQGID
201: FFFGNKSHAN SFVEFLRKVV PIEYRQDQQL VSHDVKSSLY NYKYTYSVKI CPVCREDLVC LPSKVASGLG NLGPLVVCTK VSDNITLLDP RTLRCAFLDA
301: RQYWRSGFRS ALTSRQLVKY FVFDVEPPVG EATVGGQKYA LSYVQIARES DIGKMFYVQT HLGHILKPGD QALGYDIYGA NVNDNEMEKY RLSVKNGLPE
401: AILIKKCYEE QRERKQKKSR NWKLKSLPME MDDSRGRVDP EKTDKEYEEF LRDLEENPEL RFNISLYRDK DYQASETASM TDGEGAPSVP IEELLADLDL
501: SFEEEDDDDE DDMAAE

Arabidopsis Description

Nonsense-mediated mRNA decay NMD3 family protein [Source:UniProtKB/TrEMBL;Acc:Q9SI58]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.