CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 3
extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	nucleus
Plant-mPloc:	cytosol, nucleus, plastid
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d030040_P001	Maize	extracellular	95.43	95.43
Zm00001d047039_P001	Maize	cytosol, nucleus, plastid, vacuole	94.86	94.86
HORVU1Hr1G050300.1	Barley	cytosol, mitochondrion	9.14	88.89
TraesCS1D01G195700.1	Wheat	unclear	87.24	87.91
TraesCS1A01G192300.1	Wheat	plastid	87.24	87.91
TraesCS1B01G207100.1	Wheat	plastid	85.71	86.87
Os10t0573900-01	Rice	nucleus	85.9	86.23
GSMUA_Achr3P21620_001	Banana	cytosol	23.81	64.43
Solyc06g053800.1.1	Tomato	cytosol	54.48	56.63
KRH03172	Soybean	cytosol, endoplasmic reticulum	48.95	56.36
PGSC0003DMT400041978	Potato	cytosol	54.48	55.97
KRG97977	Soybean	cytosol	53.52	55.1
KRH30911	Soybean	cytosol	53.52	55.1
PGSC0003DMT400034496	Potato	cytosol	52.38	53.82
Solyc11g011780.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	51.24	53.59
CDY07477	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	50.86	52.56
CDY39255	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	50.67	52.36
Bra004140.1-P	Field mustard	cytosol	51.05	51.84
AT2G03820.1	Thale cress	cytosol	50.86	51.74
Bra040033.1-P	Field mustard	cytosol	50.1	51.67
CDY22138	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	49.71	51.28
OQU88218	Sorghum	plastid	42.48	47.55
VIT_04s0043g00250.t01	Wine grape	golgi	54.48	46.58
VIT_08s0007g08810.t01	Wine grape	cytosol	45.33	45.68
VIT_08s0007g08820.t01	Wine grape	extracellular	5.52	37.18
VIT_08s0007g08500.t01	Wine grape	cytosol	20.76	29.3

Protein Annotations

MapMan:17.1.2.2.2.5	EntrezGene:8055149	UniProt:C5WRC0	ncoils:Coil	EnsemblPlants:EER91888	ProteinID:EER91888
ProteinID:EER91888.1	GO:GO:0000055	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006810	GO:GO:0008150	GO:GO:0015031
GO:GO:0043023	InterPro:NMD3	PFAM:PF04981	PANTHER:PTHR12746	EnsemblPlantsGene:SORBI_3001G288800	unigene:Sbi.1103
SignalP:SignalP-noTM	UniParc:UPI0001A823D6	RefSeq:XP_002464890.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:+:56540180..56543697

Molecular Weight (calculated)

58886.7 Da

IEP (calculated)

6.245

GRAVY (calculated)

-0.272

Length

525 amino acids

Sequence
(BLAST)

001: MMPGSAPAAG GAGMFVPAAT AGTVLCCMCG VSMQPNPANM CARCLRSRVD ITEGVPRHAA VVYCPDCSSY LQPPRSWLRA TPESPELMQI LLRRINRPLA
101: RLRVSLSGAE FVFSEPHSKR LRLKLRLRRE VLHGIVLEQT HPVEFVVHDR LCDSCSRAQA NPDQWVAVVQ LRQHVPHRRT FLYLEQLLLK HGQASLAIRV
201: AAAPGGLDFF FGSRSHAARL VDFLATVAPI QTSTAKQLVS HDTKSSVYNY KYTFSVEICP ICREDLIALS PQASRDMGGL GPLVLCVKVT NAIALLDPLT
301: LRVHHLEEKK YRVYNFKAAL TSKQLVEYIV LDIEQESPEI SIDGSRYQLA YAQVARVSDF GKNDTIFTVR THLGHLLNPG DHALGYDLYG ANLNDDDMDT
401: AMARYSLPEV VLVKKSYEKR PRTRRWKLKR LPVEEDAANK AKGEEERRLD EYEAFLRDLE LDPEMRFKMD LYKNEDYRSE MASTVGDDIP TVPIDELLED
501: LTLGEDEEDE GEEAVEGNTS AGMVE

Best Arabidopsis Sequence Match ( AT2G03820.1 )
(BLAST)

001: MSVMDESGMF NVQQTIGSVL CCKCGVPMAP NAANMCVNCL RSEVDITEGL QKSIQIFYCP ECTCYLQPPK TWIKCQWESK ELLTFCIKRL KNLNKVKLKN
101: AEFVWTEPHS KRIKVKLTVQ AEVLNGAVLE QSYPVEYTVR DNLCESCSRF QANPDQWVAS IQLRQHVSHR RTFFYLEQLI LRHDAASRAI RIQQVDQGID
201: FFFGNKSHAN SFVEFLRKVV PIEYRQDQQL VSHDVKSSLY NYKYTYSVKI CPVCREDLVC LPSKVASGLG NLGPLVVCTK VSDNITLLDP RTLRCAFLDA
301: RQYWRSGFRS ALTSRQLVKY FVFDVEPPVG EATVGGQKYA LSYVQIARES DIGKMFYVQT HLGHILKPGD QALGYDIYGA NVNDNEMEKY RLSVKNGLPE
401: AILIKKCYEE QRERKQKKSR NWKLKSLPME MDDSRGRVDP EKTDKEYEEF LRDLEENPEL RFNISLYRDK DYQASETASM TDGEGAPSVP IEELLADLDL
501: SFEEEDDDDE DDMAAE

Arabidopsis Description

Nonsense-mediated mRNA decay NMD3 family protein [Source:UniProtKB/TrEMBL;Acc:Q9SI58]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.