Factsheet for VIT_08s0007g08810.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400041978	Potato	cytosol	65.83	67.12
Solyc06g053800.1.1	Tomato	cytosol	64.49	66.53
Solyc11g011780.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	60.46	62.75
PGSC0003DMT400034496	Potato	cytosol	61.42	62.62
VIT_04s0043g00250.t01	Wine grape	golgi	73.32	62.22
GSMUA_Achr3P21620_001	Banana	cytosol	21.31	57.22
VIT_08s0007g08820.t01	Wine grape	extracellular	7.68	51.28
TraesCS1B01G207100.1	Wheat	plastid	45.3	45.56
TraesCS1D01G195700.1	Wheat	unclear	45.49	45.49
TraesCS1A01G192300.1	Wheat	plastid	45.49	45.49
EER91888	Sorghum	plastid	45.68	45.33
Zm00001d030040_P001	Maize	extracellular	45.11	44.76
Zm00001d047039_P001	Maize	cytosol, nucleus, plastid, vacuole	44.91	44.57
Os10t0573900-01	Rice	nucleus	43.76	43.59
TraesCS3B01G558700.1	Wheat	cytosol, plastid	36.47	39.83
TraesCS3D01G503800.1	Wheat	plastid	34.36	39.6
VIT_08s0007g08500.t01	Wine grape	cytosol	28.21	39.52
TraesCS3B01G558900.1	Wheat	cytosol, plastid	35.7	38.99
TraesCS3A01G496100.1	Wheat	cytosol, plastid	35.51	38.78
OQU88218	Sorghum	plastid	31.86	35.39
Zm00001d011822_P001	Maize	cytosol	23.8	30.62

Protein Annotations

EntrezGene:100241812	wikigene:100241812	MapMan:17.1.2.2.2.5	ProteinID:CCB55108	ProteinID:CCB55108.1	UniProt:F6HKV1
EMBL:FN595991	GO:GO:0000055	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006810	GO:GO:0008150	GO:GO:0015031
GO:GO:0043023	EntrezGene:LOC100241812	wikigene:LOC100241812	InterPro:NMD3	PFAM:PF04981	PANTHER:PTHR12746
UniParc:UPI000210932D	ArrayExpress:VIT_08s0007g08810	EnsemblPlantsGene:VIT_08s0007g08810	EnsemblPlants:VIT_08s0007g08810.t01	unigene:Vvi.20108	RefSeq:XP_002278623
RefSeq:XP_002278623.1	RefSeq:XP_002278623.2	SEG:seg	:	:	:

Description

60S ribosomal export protein NMD3 [Source:UniProtKB/TrEMBL;Acc:F6HKV1]

Coordinates

chr8:+:22183311..22186024

Molecular Weight (calculated)

59439.3 Da

IEP (calculated)

6.397

GRAVY (calculated)

-0.376

Length

521 amino acids

Sequence
(BLAST)

001: MAPHQEALSE IALQTRESPV FLCHSQSSQL SDMTEEAGMF RVHHTIGSVL CCKCGIPMTP NAANMCVKCL RTEVDITEGL QKHATLVHCP ECDRYFRPPK
101: TWIEPQLESK ELLTLCLKTL KNLNQVRLIH AEFIWTEPHS KRIKVKLRVQ KEVLNGAILE QAYIVEYVQQ EHMCESCSRV QANPDQWVAS VQVRQHVPHR
201: RTLFYLEQLI LMHDAARCAK KIKPMNQGID FFFANWSHGK KFVEFIGKMV PIKSHRPSQQ LVSHDPKSNN YYYKYTLSVE ICPICREDLI CLPREVASGL
301: GNPHSLVICT KVTNRITFLD PYTLKHHCLD AEQYWRSPFK ALLSSRQLVE YIVLDVGIVY SEVHVGGSKY ALADAQVARL SDFGKNDTIF NITTHLGHLL
401: NPGDHALGYD MFATNSNDME LEKYRDFDLP PAILIRKTYE ENCQGKGGKP PPLMSREYEE FLRRLEDNPE LTLNISLHEN KEYPPPSVRD GEEDSACGAL
501: EKLLANVDLS DDEDGDDAMA E

Best Arabidopsis Sequence Match ( AT2G03820.1 )
(BLAST)

001: MSVMDESGMF NVQQTIGSVL CCKCGVPMAP NAANMCVNCL RSEVDITEGL QKSIQIFYCP ECTCYLQPPK TWIKCQWESK ELLTFCIKRL KNLNKVKLKN
101: AEFVWTEPHS KRIKVKLTVQ AEVLNGAVLE QSYPVEYTVR DNLCESCSRF QANPDQWVAS IQLRQHVSHR RTFFYLEQLI LRHDAASRAI RIQQVDQGID
201: FFFGNKSHAN SFVEFLRKVV PIEYRQDQQL VSHDVKSSLY NYKYTYSVKI CPVCREDLVC LPSKVASGLG NLGPLVVCTK VSDNITLLDP RTLRCAFLDA
301: RQYWRSGFRS ALTSRQLVKY FVFDVEPPVG EATVGGQKYA LSYVQIARES DIGKMFYVQT HLGHILKPGD QALGYDIYGA NVNDNEMEKY RLSVKNGLPE
401: AILIKKCYEE QRERKQKKSR NWKLKSLPME MDDSRGRVDP EKTDKEYEEF LRDLEENPEL RFNISLYRDK DYQASETASM TDGEGAPSVP IEELLADLDL
501: SFEEEDDDDE DDMAAE

Arabidopsis Description

Nonsense-mediated mRNA decay NMD3 family protein [Source:UniProtKB/TrEMBL;Acc:Q9SI58]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.