Subcellular Localization
min:
: max
Winner_takes_all: cytosol, plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 2
- mitochondrion 1
- extracellular 1
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G558700.1 | Wheat | cytosol, plastid | 94.76 | 94.76 |
| TraesCS3D01G503800.1 | Wheat | plastid | 88.47 | 93.36 |
| TraesCS3A01G496100.1 | Wheat | cytosol, plastid | 92.24 | 92.24 |
| HORVU1Hr1G050300.1 | Barley | cytosol, mitochondrion | 7.97 | 70.37 |
| OQU88218 | Sorghum | plastid | 54.3 | 55.22 |
| GSMUA_Achr3P21620_001 | Banana | cytosol | 20.55 | 50.52 |
| TraesCS1B01G207100.1 | Wheat | plastid | 52.2 | 48.07 |
| Zm00001d011822_P001 | Maize | cytosol | 36.06 | 42.47 |
| KRH03172 | Soybean | cytosol, endoplasmic reticulum | 38.99 | 40.79 |
| Solyc06g053800.1.1 | Tomato | cytosol | 42.56 | 40.2 |
| PGSC0003DMT400041978 | Potato | cytosol | 42.77 | 39.92 |
| Solyc11g011780.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 41.51 | 39.44 |
| KRG97977 | Soybean | cytosol | 41.72 | 39.02 |
| PGSC0003DMT400034496 | Potato | cytosol | 41.72 | 38.94 |
| KRH30911 | Soybean | cytosol | 41.51 | 38.82 |
| Bra040033.1-P | Field mustard | cytosol | 40.67 | 38.11 |
| CDY07477 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 40.46 | 37.99 |
| AT2G03820.1 | Thale cress | cytosol | 40.67 | 37.6 |
| Bra004140.1-P | Field mustard | cytosol | 40.46 | 37.33 |
| CDY39255 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 39.62 | 37.2 |
| CDY22138 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 39.62 | 37.13 |
| VIT_08s0007g08810.t01 | Wine grape | cytosol | 38.99 | 35.7 |
| VIT_04s0043g00250.t01 | Wine grape | golgi | 42.77 | 33.22 |
| VIT_08s0007g08820.t01 | Wine grape | extracellular | 4.4 | 26.92 |
| VIT_08s0007g08500.t01 | Wine grape | cytosol | 19.08 | 24.46 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G558900.1 | EnsemblPlantsGene:TraesCS3B01G558900 | InterPro:NMD3 | PANTHER:PTHR12746 | PFAM:PF04981 | SEG:seg |
| MapMan:17.1.2.2.2.5 | : | : | : | : | : |
Description
No Description!
Coordinates
chr3B:-:793029215..793030648
Molecular Weight (calculated)
52008.3 Da
IEP (calculated)
7.229
GRAVY (calculated)
-0.139
Length
477 amino acids
Sequence
(BLAST)
(BLAST)
001: MASPHPLPGD MLFLPPQSQA AAAACTTLCC LCGVPMPPNA ANTCAPCLRA RIDVAEGAPR HAAVVHCPSC SSYLEPPRRW TRAAAESAKL LQLLLRRVQR
101: PIQRLGVSLT AAEFVFTEPH SKRIRLRLRL RREVLPGRGV ALERDHAVEF TVHDRLCDPC ARARADPDQD QWCAVVQLRQ RASHRRTLLH LEQRLAALGA
201: AGSATRVDVT SADGIDFFFA SRSHAAGLVA LIASLAPARV ADAARQLVSH DTKSNTYRHR HAFSVELCPV CRDDLVFLPR EASRALGGLG PLVLCVRVTD
301: TLALLDASTH RVVSLGIKDY DRHRFEPTLS SRQLVEYVVL DVDPSLAIGD ATAARFGYRT AYVQVARASE LGRTDAIITV RTHLGHLLRP GDRALGYDLR
401: GANANDLDGQ SHCLPDAVLV KKFYEKGGDG ERMQQDGGRS DDHGDVGIDD IAMGIGGIDL DPCDEVELDE LLEDLRI
101: PIQRLGVSLT AAEFVFTEPH SKRIRLRLRL RREVLPGRGV ALERDHAVEF TVHDRLCDPC ARARADPDQD QWCAVVQLRQ RASHRRTLLH LEQRLAALGA
201: AGSATRVDVT SADGIDFFFA SRSHAAGLVA LIASLAPARV ADAARQLVSH DTKSNTYRHR HAFSVELCPV CRDDLVFLPR EASRALGGLG PLVLCVRVTD
301: TLALLDASTH RVVSLGIKDY DRHRFEPTLS SRQLVEYVVL DVDPSLAIGD ATAARFGYRT AYVQVARASE LGRTDAIITV RTHLGHLLRP GDRALGYDLR
401: GANANDLDGQ SHCLPDAVLV KKFYEKGGDG ERMQQDGGRS DDHGDVGIDD IAMGIGGIDL DPCDEVELDE LLEDLRI
001: MSVMDESGMF NVQQTIGSVL CCKCGVPMAP NAANMCVNCL RSEVDITEGL QKSIQIFYCP ECTCYLQPPK TWIKCQWESK ELLTFCIKRL KNLNKVKLKN
101: AEFVWTEPHS KRIKVKLTVQ AEVLNGAVLE QSYPVEYTVR DNLCESCSRF QANPDQWVAS IQLRQHVSHR RTFFYLEQLI LRHDAASRAI RIQQVDQGID
201: FFFGNKSHAN SFVEFLRKVV PIEYRQDQQL VSHDVKSSLY NYKYTYSVKI CPVCREDLVC LPSKVASGLG NLGPLVVCTK VSDNITLLDP RTLRCAFLDA
301: RQYWRSGFRS ALTSRQLVKY FVFDVEPPVG EATVGGQKYA LSYVQIARES DIGKMFYVQT HLGHILKPGD QALGYDIYGA NVNDNEMEKY RLSVKNGLPE
401: AILIKKCYEE QRERKQKKSR NWKLKSLPME MDDSRGRVDP EKTDKEYEEF LRDLEENPEL RFNISLYRDK DYQASETASM TDGEGAPSVP IEELLADLDL
501: SFEEEDDDDE DDMAAE
101: AEFVWTEPHS KRIKVKLTVQ AEVLNGAVLE QSYPVEYTVR DNLCESCSRF QANPDQWVAS IQLRQHVSHR RTFFYLEQLI LRHDAASRAI RIQQVDQGID
201: FFFGNKSHAN SFVEFLRKVV PIEYRQDQQL VSHDVKSSLY NYKYTYSVKI CPVCREDLVC LPSKVASGLG NLGPLVVCTK VSDNITLLDP RTLRCAFLDA
301: RQYWRSGFRS ALTSRQLVKY FVFDVEPPVG EATVGGQKYA LSYVQIARES DIGKMFYVQT HLGHILKPGD QALGYDIYGA NVNDNEMEKY RLSVKNGLPE
401: AILIKKCYEE QRERKQKKSR NWKLKSLPME MDDSRGRVDP EKTDKEYEEF LRDLEENPEL RFNISLYRDK DYQASETASM TDGEGAPSVP IEELLADLDL
501: SFEEEDDDDE DDMAAE
Arabidopsis Description
Nonsense-mediated mRNA decay NMD3 family protein [Source:UniProtKB/TrEMBL;Acc:Q9SI58]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.