Factsheet for Bra040033.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 4
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22138	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	94.5	94.5
Bra004140.1-P	Field mustard	cytosol	89.19	87.81
AT2G03820.1	Thale cress	cytosol	81.93	80.81
Solyc06g053800.1.1	Tomato	cytosol	62.67	63.17
KRH03172	Soybean	cytosol, endoplasmic reticulum	56.58	63.16
PGSC0003DMT400041978	Potato	cytosol	63.26	63.01
HORVU1Hr1G050300.1	Barley	cytosol, mitochondrion	6.68	62.96
KRG97977	Soybean	cytosol	62.08	61.96
Solyc11g011780.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	60.9	61.75
KRH30911	Soybean	cytosol	61.69	61.57
PGSC0003DMT400034496	Potato	cytosol	61.1	60.86
GSMUA_Achr3P21620_001	Banana	cytosol	23.18	60.82
TraesCS1D01G195700.1	Wheat	unclear	53.24	52.02
TraesCS1A01G192300.1	Wheat	plastid	53.05	51.82
TraesCS1B01G207100.1	Wheat	plastid	52.65	51.74
EER91888	Sorghum	plastid	51.67	50.1
Os10t0573900-01	Rice	nucleus	50.88	49.52
Zm00001d030040_P001	Maize	extracellular	50.88	49.33
Zm00001d047039_P001	Maize	cytosol, nucleus, plastid, vacuole	50.49	48.95
TraesCS3B01G558700.1	Wheat	cytosol, plastid	39.29	41.93
TraesCS3D01G503800.1	Wheat	plastid	36.54	41.15
TraesCS3A01G496100.1	Wheat	cytosol, plastid	38.51	41.09
TraesCS3B01G558900.1	Wheat	cytosol, plastid	38.11	40.67
OQU88218	Sorghum	plastid	32.61	35.39
VIT_08s0007g08500.t01	Wine grape	cytosol	25.54	34.95
Zm00001d011822_P001	Maize	cytosol	23.58	29.63

Protein Annotations

EnsemblPlants:Bra040033.1	EnsemblPlants:Bra040033.1-P	EnsemblPlantsGene:Bra040033	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0006810	GO:GO:0008150	GO:GO:0015031	InterPro:NMD3
ncoils:Coil	PANTHER:PTHR12746	PFAM:PF04981	SEG:seg	UniParc:UPI0002544754	UniProt:M4FG09
MapMan:17.1.2.2.2.5	:	:	:	:	:

Description

AT2G03820 (E=7e-241) | nonsense-mediated mRNA decay NMD3 family protein

Coordinates

chrA01:+:27845102..27846631

Molecular Weight (calculated)

58095.4 Da

IEP (calculated)

6.578

GRAVY (calculated)

-0.433

Length

509 amino acids

Sequence
(BLAST)

001: MSALTYQDSG MFKVEQTIGS VLCCKCGVPM PPNAANMCVN CLRSQVDITE GLQKSVQIFY CPECGCYLQP PKTWIKAQWE SKELLTFCIK RLKNLNKVRL
101: TNAEFVWTEP HSKRIKLKLT VQAEVLNGAG LEQSYLVEYT VRDHLCESCS RFQANPDQWV ASVQLRQHVS HRRSFFYLEQ LILRNDAASR AVRIKQVHQG
201: VDFFFGNKRH ADNFVDFLSK VVPIESRQDK QLVSHDVKSS LYNYKYTYSV KICPICREDL IFLPSKVASG LGSLGPLVVC TRVSDRITLL DPRTLRCAFL
301: DARQYWRSGF RSALTSRQLV KYSVFYVEPP VGEATVGGQK YALSYVHIAR ESVGKMLTVQ THLGHILKTG DQALGYDIYG ANVNDDLHGG LPEVILIKKC
401: YDKERERKKG KPRAFTTKKL PMEMDESRGG RGVDPEKMEN EYEEFLRDLE ENPELRFNVS LYKNKDYQES DETASMTDGE GAPTVPIEEL LAELELSEEE
501: GDDEEYMDE

Best Arabidopsis Sequence Match ( AT2G03820.1 )
(BLAST)

001: MSVMDESGMF NVQQTIGSVL CCKCGVPMAP NAANMCVNCL RSEVDITEGL QKSIQIFYCP ECTCYLQPPK TWIKCQWESK ELLTFCIKRL KNLNKVKLKN
101: AEFVWTEPHS KRIKVKLTVQ AEVLNGAVLE QSYPVEYTVR DNLCESCSRF QANPDQWVAS IQLRQHVSHR RTFFYLEQLI LRHDAASRAI RIQQVDQGID
201: FFFGNKSHAN SFVEFLRKVV PIEYRQDQQL VSHDVKSSLY NYKYTYSVKI CPVCREDLVC LPSKVASGLG NLGPLVVCTK VSDNITLLDP RTLRCAFLDA
301: RQYWRSGFRS ALTSRQLVKY FVFDVEPPVG EATVGGQKYA LSYVQIARES DIGKMFYVQT HLGHILKPGD QALGYDIYGA NVNDNEMEKY RLSVKNGLPE
401: AILIKKCYEE QRERKQKKSR NWKLKSLPME MDDSRGRVDP EKTDKEYEEF LRDLEENPEL RFNISLYRDK DYQASETASM TDGEGAPSVP IEELLADLDL
501: SFEEEDDDDE DDMAAE

Arabidopsis Description

Nonsense-mediated mRNA decay NMD3 family protein [Source:UniProtKB/TrEMBL;Acc:Q9SI58]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.