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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • plastid 2
  • cytosol 2
  • mitochondrion 1
  • endoplasmic reticulum 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:cytosol, mitochondrion, plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:endoplasmic reticulum
YLoc:cytosol
extracellular: 20408568
msms PMID: 20408568 doi
W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li
Department of Plant Nutrition, China Agricultural University, Beijing, PR China.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EER91888 Sorghum plastid 95.43 95.43
Zm00001d047039_P001 Maize cytosol, nucleus, plastid, vacuole 94.67 94.67
HORVU1Hr1G050300.1 Barley cytosol, mitochondrion 8.95 87.04
TraesCS1D01G195700.1 Wheat unclear 86.1 86.76
TraesCS1A01G192300.1 Wheat plastid 86.1 86.76
Os10t0573900-01 Rice nucleus 85.52 85.85
TraesCS1B01G207100.1 Wheat plastid 84.57 85.71
GSMUA_Achr3P21620_001 Banana cytosol 23.43 63.4
Solyc06g053800.1.1 Tomato cytosol 53.71 55.84
KRH03172 Soybean cytosol, endoplasmic reticulum 48.38 55.7
PGSC0003DMT400041978 Potato cytosol 53.9 55.38
KRG97977 Soybean cytosol 52.95 54.51
KRH30911 Soybean cytosol 52.95 54.51
PGSC0003DMT400034496 Potato cytosol 52.0 53.42
Solyc11g011780.1.1 Tomato cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole 50.86 53.19
CDY07477 Canola cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole 50.29 51.97
CDY39255 Canola cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole 50.1 51.77
Bra004140.1-P Field mustard cytosol 50.67 51.45
AT2G03820.1 Thale cress cytosol 50.48 51.36
Bra040033.1-P Field mustard cytosol 49.33 50.88
CDY22138 Canola cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole 48.57 50.1
VIT_04s0043g00250.t01 Wine grape golgi 54.1 46.25
VIT_08s0007g08810.t01 Wine grape cytosol 44.76 45.11
Zm00001d011822_P001 Maize cytosol 32.19 41.73
VIT_08s0007g08820.t01 Wine grape extracellular 5.52 37.18
VIT_08s0007g08500.t01 Wine grape cytosol 19.81 27.96
Protein Annotations
EMBL:BT036896EnsemblPlants:Zm00001d030040_P001EnsemblPlants:Zm00001d030040_T001EnsemblPlantsGene:Zm00001d030040EntrezGene:100194368GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005737GO:GO:0006810GO:GO:0008150
GO:GO:0015031InterPro:NMD3PANTHER:PTHR12746PFAM:PF04981ProteinID:ONM00072.1SEG:seg
UniParc:UPI00017B7337UniProt:B4FIF8MapMan:17.1.2.2.2.5:::
Description
nonsense-mediated mRNA decay NMD3 family protein
Coordinates
chr1:+:101466317..101468065
Molecular Weight (calculated)
58746.4 Da
IEP (calculated)
6.310
GRAVY (calculated)
-0.275
Length
525 amino acids
Sequence
(BLAST)
001: MLPGSEPAAG GTGMFVPAAT AGTVLCCMCG VSMQPNPANM CARCLRARVD ITEGVPRHAA VVYCPDCSSY LQPPRSWLRA TPESPELMQI LLRRVNRPLA
101: RLRVSLSGAE FVFSEPHSKR LRLNLRLRRE VLHGIVLEQT HPVEFVVHDR LCDSCSRAQA NPDQWVAVVQ LRQHVPHRRT FLYLEQLLLK HGQASLAIRV
201: AAAPGGLDFF FGSRSHAARL VDFLATVAPI QTQTAKQLVS HDTKSSVYNY KYTFSVDICP ICREDLIALS PQASRDMGGL GPLVLCVKVT NAIALLDPLT
301: LRVHHLEEKK YRVYNFKATL TSKQLVEYIV LDIEQESPEI SIDGSRYQLA YAQVARVSDF GKNDTIFTVR THLGHLLNPG DHALGYDLYG ANLNDDDMNT
401: AMTRYSLPEA VLVKKSYEKR PRTRRWKLKR LPVEEDAANK AKGEEEKTLD EYEAFLRDLE LDPGMRFGVN LYKNEDYRSE MASTVGDDIP TVPIEELIED
501: LTLGDNEDDE GEEAVEGNTH AGMVE
Best Arabidopsis Sequence Match ( AT2G03820.1 )
(BLAST)
001: MSVMDESGMF NVQQTIGSVL CCKCGVPMAP NAANMCVNCL RSEVDITEGL QKSIQIFYCP ECTCYLQPPK TWIKCQWESK ELLTFCIKRL KNLNKVKLKN
101: AEFVWTEPHS KRIKVKLTVQ AEVLNGAVLE QSYPVEYTVR DNLCESCSRF QANPDQWVAS IQLRQHVSHR RTFFYLEQLI LRHDAASRAI RIQQVDQGID
201: FFFGNKSHAN SFVEFLRKVV PIEYRQDQQL VSHDVKSSLY NYKYTYSVKI CPVCREDLVC LPSKVASGLG NLGPLVVCTK VSDNITLLDP RTLRCAFLDA
301: RQYWRSGFRS ALTSRQLVKY FVFDVEPPVG EATVGGQKYA LSYVQIARES DIGKMFYVQT HLGHILKPGD QALGYDIYGA NVNDNEMEKY RLSVKNGLPE
401: AILIKKCYEE QRERKQKKSR NWKLKSLPME MDDSRGRVDP EKTDKEYEEF LRDLEENPEL RFNISLYRDK DYQASETASM TDGEGAPSVP IEELLADLDL
501: SFEEEDDDDE DDMAAE
Arabidopsis Description
Nonsense-mediated mRNA decay NMD3 family protein [Source:UniProtKB/TrEMBL;Acc:Q9SI58]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.