Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- mitochondrion 1
- endoplasmic reticulum 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
20408568
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
EER91888 | Sorghum | plastid | 95.43 | 95.43 |
Zm00001d047039_P001 | Maize | cytosol, nucleus, plastid, vacuole | 94.67 | 94.67 |
HORVU1Hr1G050300.1 | Barley | cytosol, mitochondrion | 8.95 | 87.04 |
TraesCS1D01G195700.1 | Wheat | unclear | 86.1 | 86.76 |
TraesCS1A01G192300.1 | Wheat | plastid | 86.1 | 86.76 |
Os10t0573900-01 | Rice | nucleus | 85.52 | 85.85 |
TraesCS1B01G207100.1 | Wheat | plastid | 84.57 | 85.71 |
GSMUA_Achr3P21620_001 | Banana | cytosol | 23.43 | 63.4 |
Solyc06g053800.1.1 | Tomato | cytosol | 53.71 | 55.84 |
KRH03172 | Soybean | cytosol, endoplasmic reticulum | 48.38 | 55.7 |
PGSC0003DMT400041978 | Potato | cytosol | 53.9 | 55.38 |
KRG97977 | Soybean | cytosol | 52.95 | 54.51 |
KRH30911 | Soybean | cytosol | 52.95 | 54.51 |
PGSC0003DMT400034496 | Potato | cytosol | 52.0 | 53.42 |
Solyc11g011780.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 50.86 | 53.19 |
CDY07477 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 50.29 | 51.97 |
CDY39255 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 50.1 | 51.77 |
Bra004140.1-P | Field mustard | cytosol | 50.67 | 51.45 |
AT2G03820.1 | Thale cress | cytosol | 50.48 | 51.36 |
Bra040033.1-P | Field mustard | cytosol | 49.33 | 50.88 |
CDY22138 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 48.57 | 50.1 |
VIT_04s0043g00250.t01 | Wine grape | golgi | 54.1 | 46.25 |
VIT_08s0007g08810.t01 | Wine grape | cytosol | 44.76 | 45.11 |
Zm00001d011822_P001 | Maize | cytosol | 32.19 | 41.73 |
VIT_08s0007g08820.t01 | Wine grape | extracellular | 5.52 | 37.18 |
VIT_08s0007g08500.t01 | Wine grape | cytosol | 19.81 | 27.96 |
Protein Annotations
EMBL:BT036896 | EnsemblPlants:Zm00001d030040_P001 | EnsemblPlants:Zm00001d030040_T001 | EnsemblPlantsGene:Zm00001d030040 | EntrezGene:100194368 | GO:GO:0005575 |
GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006810 | GO:GO:0008150 |
GO:GO:0015031 | InterPro:NMD3 | PANTHER:PTHR12746 | PFAM:PF04981 | ProteinID:ONM00072.1 | SEG:seg |
UniParc:UPI00017B7337 | UniProt:B4FIF8 | MapMan:17.1.2.2.2.5 | : | : | : |
Description
nonsense-mediated mRNA decay NMD3 family protein
Coordinates
chr1:+:101466317..101468065
Molecular Weight (calculated)
58746.4 Da
IEP (calculated)
6.310
GRAVY (calculated)
-0.275
Length
525 amino acids
Sequence
(BLAST)
(BLAST)
001: MLPGSEPAAG GTGMFVPAAT AGTVLCCMCG VSMQPNPANM CARCLRARVD ITEGVPRHAA VVYCPDCSSY LQPPRSWLRA TPESPELMQI LLRRVNRPLA
101: RLRVSLSGAE FVFSEPHSKR LRLNLRLRRE VLHGIVLEQT HPVEFVVHDR LCDSCSRAQA NPDQWVAVVQ LRQHVPHRRT FLYLEQLLLK HGQASLAIRV
201: AAAPGGLDFF FGSRSHAARL VDFLATVAPI QTQTAKQLVS HDTKSSVYNY KYTFSVDICP ICREDLIALS PQASRDMGGL GPLVLCVKVT NAIALLDPLT
301: LRVHHLEEKK YRVYNFKATL TSKQLVEYIV LDIEQESPEI SIDGSRYQLA YAQVARVSDF GKNDTIFTVR THLGHLLNPG DHALGYDLYG ANLNDDDMNT
401: AMTRYSLPEA VLVKKSYEKR PRTRRWKLKR LPVEEDAANK AKGEEEKTLD EYEAFLRDLE LDPGMRFGVN LYKNEDYRSE MASTVGDDIP TVPIEELIED
501: LTLGDNEDDE GEEAVEGNTH AGMVE
101: RLRVSLSGAE FVFSEPHSKR LRLNLRLRRE VLHGIVLEQT HPVEFVVHDR LCDSCSRAQA NPDQWVAVVQ LRQHVPHRRT FLYLEQLLLK HGQASLAIRV
201: AAAPGGLDFF FGSRSHAARL VDFLATVAPI QTQTAKQLVS HDTKSSVYNY KYTFSVDICP ICREDLIALS PQASRDMGGL GPLVLCVKVT NAIALLDPLT
301: LRVHHLEEKK YRVYNFKATL TSKQLVEYIV LDIEQESPEI SIDGSRYQLA YAQVARVSDF GKNDTIFTVR THLGHLLNPG DHALGYDLYG ANLNDDDMNT
401: AMTRYSLPEA VLVKKSYEKR PRTRRWKLKR LPVEEDAANK AKGEEEKTLD EYEAFLRDLE LDPGMRFGVN LYKNEDYRSE MASTVGDDIP TVPIEELIED
501: LTLGDNEDDE GEEAVEGNTH AGMVE
001: MSVMDESGMF NVQQTIGSVL CCKCGVPMAP NAANMCVNCL RSEVDITEGL QKSIQIFYCP ECTCYLQPPK TWIKCQWESK ELLTFCIKRL KNLNKVKLKN
101: AEFVWTEPHS KRIKVKLTVQ AEVLNGAVLE QSYPVEYTVR DNLCESCSRF QANPDQWVAS IQLRQHVSHR RTFFYLEQLI LRHDAASRAI RIQQVDQGID
201: FFFGNKSHAN SFVEFLRKVV PIEYRQDQQL VSHDVKSSLY NYKYTYSVKI CPVCREDLVC LPSKVASGLG NLGPLVVCTK VSDNITLLDP RTLRCAFLDA
301: RQYWRSGFRS ALTSRQLVKY FVFDVEPPVG EATVGGQKYA LSYVQIARES DIGKMFYVQT HLGHILKPGD QALGYDIYGA NVNDNEMEKY RLSVKNGLPE
401: AILIKKCYEE QRERKQKKSR NWKLKSLPME MDDSRGRVDP EKTDKEYEEF LRDLEENPEL RFNISLYRDK DYQASETASM TDGEGAPSVP IEELLADLDL
501: SFEEEDDDDE DDMAAE
101: AEFVWTEPHS KRIKVKLTVQ AEVLNGAVLE QSYPVEYTVR DNLCESCSRF QANPDQWVAS IQLRQHVSHR RTFFYLEQLI LRHDAASRAI RIQQVDQGID
201: FFFGNKSHAN SFVEFLRKVV PIEYRQDQQL VSHDVKSSLY NYKYTYSVKI CPVCREDLVC LPSKVASGLG NLGPLVVCTK VSDNITLLDP RTLRCAFLDA
301: RQYWRSGFRS ALTSRQLVKY FVFDVEPPVG EATVGGQKYA LSYVQIARES DIGKMFYVQT HLGHILKPGD QALGYDIYGA NVNDNEMEKY RLSVKNGLPE
401: AILIKKCYEE QRERKQKKSR NWKLKSLPME MDDSRGRVDP EKTDKEYEEF LRDLEENPEL RFNISLYRDK DYQASETASM TDGEGAPSVP IEELLADLDL
501: SFEEEDDDDE DDMAAE
Arabidopsis Description
Nonsense-mediated mRNA decay NMD3 family protein [Source:UniProtKB/TrEMBL;Acc:Q9SI58]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.