Factsheet for VIT_08s0007g08500.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G050300.1	Barley	cytosol, mitochondrion	8.33	57.41
VIT_08s0007g08820.t01	Wine grape	extracellular	9.14	43.59
VIT_08s0007g08810.t01	Wine grape	cytosol	39.52	28.21
CDY22138	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	35.22	25.74
Bra040033.1-P	Field mustard	cytosol	34.95	25.54
CDY39255	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	34.41	25.2
CDY07477	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	34.14	25.0
Bra004140.1-P	Field mustard	cytosol	34.68	24.95
VIT_04s0043g00250.t01	Wine grape	golgi	40.86	24.76
GSMUA_Achr3P21620_001	Banana	cytosol	12.9	24.74
AT2G03820.1	Thale cress	cytosol	34.14	24.61
EER91888	Sorghum	plastid	29.3	20.76
TraesCS1B01G207100.1	Wheat	plastid	28.76	20.66
TraesCS1D01G195700.1	Wheat	unclear	28.76	20.54
TraesCS1A01G192300.1	Wheat	plastid	28.76	20.54
Zm00001d047039_P001	Maize	cytosol, nucleus, plastid, vacuole	28.23	20.0
Zm00001d030040_P001	Maize	extracellular	27.96	19.81
Os10t0573900-01	Rice	nucleus	27.69	19.69
TraesCS3D01G503800.1	Wheat	plastid	23.92	19.69
TraesCS3B01G558700.1	Wheat	cytosol, plastid	24.73	19.29
TraesCS3A01G496100.1	Wheat	cytosol, plastid	24.46	19.08
TraesCS3B01G558900.1	Wheat	cytosol, plastid	24.46	19.08
OQU88218	Sorghum	plastid	20.16	15.99
Zm00001d011822_P001	Maize	cytosol	16.4	15.06

Protein Annotations

MapMan:35.2	ProteinID:CCB55129	ProteinID:CCB55129.1	UniProt:F6HKZ1	EMBL:FN595991	GO:GO:0000055
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0006810	GO:GO:0008150	GO:GO:0015031	GO:GO:0043023	InterPro:NMD3
PFAM:PF04981	PANTHER:PTHR12746	UniParc:UPI000210964B	ArrayExpress:VIT_08s0007g08500	EnsemblPlantsGene:VIT_08s0007g08500	EnsemblPlants:VIT_08s0007g08500.t01
SEG:seg	:	:	:	:	:

Description

60S ribosomal export protein NMD3 [Source:UniProtKB/TrEMBL;Acc:F6HKZ1]

Coordinates

chr8:+:21904350..21906114

Molecular Weight (calculated)

41210.8 Da

IEP (calculated)

8.104

GRAVY (calculated)

-0.066

Length

372 amino acids

Sequence
(BLAST)

001: MAQESSMFRG HPTVGRVLCC KCGIPIVPNA ASMCVKCLSS EVDITEATQS LDPSPIGVDT ALDLMLDDAE ELELRLIHAE FVWTEPHSKR IKVKLRVQKE
101: VLNGAILEQV YIVEYVQKEH MCESCCRAQG NPDQWVASVQ VRQHVPLRRT LFHLEQLILR YFVLPDAILI KKIYVENCQR KGGKPPELSL PATSSGGHFI
201: CSSSPSIFFL GSASSPAVST GSDLSTEQET AAIVRHSPAR TQAVGHLHHG SVEATLQRPL TPRSCRSHYD DLKRRFQRIV GGDGGGAVVS FLFSFYALLR
301: IGLASSFLMP LLCGSCIFFS DSIPHVENNH RSQLQKIKIQ FTNCLEILRE RRIVSSSAIA SDDALNRRLK SS

Best Arabidopsis Sequence Match ( AT2G03820.1 )
(BLAST)

001: MSVMDESGMF NVQQTIGSVL CCKCGVPMAP NAANMCVNCL RSEVDITEGL QKSIQIFYCP ECTCYLQPPK TWIKCQWESK ELLTFCIKRL KNLNKVKLKN
101: AEFVWTEPHS KRIKVKLTVQ AEVLNGAVLE QSYPVEYTVR DNLCESCSRF QANPDQWVAS IQLRQHVSHR RTFFYLEQLI LRHDAASRAI RIQQVDQGID
201: FFFGNKSHAN SFVEFLRKVV PIEYRQDQQL VSHDVKSSLY NYKYTYSVKI CPVCREDLVC LPSKVASGLG NLGPLVVCTK VSDNITLLDP RTLRCAFLDA
301: RQYWRSGFRS ALTSRQLVKY FVFDVEPPVG EATVGGQKYA LSYVQIARES DIGKMFYVQT HLGHILKPGD QALGYDIYGA NVNDNEMEKY RLSVKNGLPE
401: AILIKKCYEE QRERKQKKSR NWKLKSLPME MDDSRGRVDP EKTDKEYEEF LRDLEENPEL RFNISLYRDK DYQASETASM TDGEGAPSVP IEELLADLDL
501: SFEEEDDDDE DDMAAE

Arabidopsis Description

Nonsense-mediated mRNA decay NMD3 family protein [Source:UniProtKB/TrEMBL;Acc:Q9SI58]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.