Factsheet for TraesCS3A01G496100.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 3
cytosol 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G503800.1	Wheat	plastid	88.26	93.14
TraesCS3B01G558900.1	Wheat	cytosol, plastid	92.24	92.24
TraesCS3B01G558700.1	Wheat	cytosol, plastid	92.24	92.24
HORVU1Hr1G050300.1	Barley	cytosol, mitochondrion	7.76	68.52
OQU88218	Sorghum	plastid	54.51	55.44
GSMUA_Achr3P21620_001	Banana	cytosol	20.96	51.55
TraesCS1A01G192300.1	Wheat	plastid	53.25	48.75
Zm00001d011822_P001	Maize	cytosol	36.9	43.46
KRH03172	Soybean	cytosol, endoplasmic reticulum	39.2	41.01
Solyc06g053800.1.1	Tomato	cytosol	42.56	40.2
PGSC0003DMT400041978	Potato	cytosol	42.35	39.53
Solyc11g011780.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	41.09	39.04
KRG97977	Soybean	cytosol	41.72	39.02
KRH30911	Soybean	cytosol	41.51	38.82
PGSC0003DMT400034496	Potato	cytosol	41.3	38.55
Bra040033.1-P	Field mustard	cytosol	41.09	38.51
CDY07477	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	40.67	38.19
CDY22138	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	40.25	37.72
AT2G03820.1	Thale cress	cytosol	40.67	37.6
Bra004140.1-P	Field mustard	cytosol	40.67	37.52
CDY39255	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	39.83	37.4
VIT_08s0007g08810.t01	Wine grape	cytosol	38.78	35.51
VIT_04s0043g00250.t01	Wine grape	golgi	42.14	32.74
VIT_08s0007g08820.t01	Wine grape	extracellular	4.4	26.92
VIT_08s0007g08500.t01	Wine grape	cytosol	19.08	24.46

Protein Annotations

EnsemblPlants:TraesCS3A01G496100.1	EnsemblPlantsGene:TraesCS3A01G496100	InterPro:NMD3	PANTHER:PTHR12746	PFAM:PF04981	SEG:seg
MapMan:17.1.2.2.2.5	:	:	:	:	:

Description

No Description!

Coordinates

chr3A:+:721663873..721665306

Molecular Weight (calculated)

51788.2 Da

IEP (calculated)

7.502

GRAVY (calculated)

-0.135

Length

477 amino acids

Sequence
(BLAST)

001: MASPHPLPGD MLFLPPPSQA AAAACTTLCC LCGVPMPPNA ANTCAPCLRA RVDVTDGAPR HAAVVHCPSC SSYLEPPRRW TRAAPESAEL LQLLLRRVQR
101: PIQRLGVTLT AAEFVFTEPH SKRIRLRLRL RREVLPGRGL ALERDHAVEF TVHDRLCDPC GRARAGPDQD QWCAVVQLRQ RASHRRTLLH LEQRLAALGA
201: AGSATRVDVT GAGGIDFFFA SRSHAAGLVA LIASLAPARV ADAARQLVSH DTKSNTYRHR HAFSVELCPV CRDDLVFLPR EASRALGGLG PLVLCVRVTD
301: TLALLDASTH RVVSLGIKDY DRHRFEPALT SRQLVEYVVL DVDPSPATGD TKAARFGYRT AYMQVARASE LGRSKAVVTV RTHLGHLLGP GDRALGYDLR
401: GANANNLDVD SHCLPDAVLV KKIYEKGGDG DRMQEDGGRS DDHGVACIDE IAMGIGGIDL DPCDEVELDE LLEDLRI

Best Arabidopsis Sequence Match ( AT2G03820.1 )
(BLAST)

001: MSVMDESGMF NVQQTIGSVL CCKCGVPMAP NAANMCVNCL RSEVDITEGL QKSIQIFYCP ECTCYLQPPK TWIKCQWESK ELLTFCIKRL KNLNKVKLKN
101: AEFVWTEPHS KRIKVKLTVQ AEVLNGAVLE QSYPVEYTVR DNLCESCSRF QANPDQWVAS IQLRQHVSHR RTFFYLEQLI LRHDAASRAI RIQQVDQGID
201: FFFGNKSHAN SFVEFLRKVV PIEYRQDQQL VSHDVKSSLY NYKYTYSVKI CPVCREDLVC LPSKVASGLG NLGPLVVCTK VSDNITLLDP RTLRCAFLDA
301: RQYWRSGFRS ALTSRQLVKY FVFDVEPPVG EATVGGQKYA LSYVQIARES DIGKMFYVQT HLGHILKPGD QALGYDIYGA NVNDNEMEKY RLSVKNGLPE
401: AILIKKCYEE QRERKQKKSR NWKLKSLPME MDDSRGRVDP EKTDKEYEEF LRDLEENPEL RFNISLYRDK DYQASETASM TDGEGAPSVP IEELLADLDL
501: SFEEEDDDDE DDMAAE

Arabidopsis Description

Nonsense-mediated mRNA decay NMD3 family protein [Source:UniProtKB/TrEMBL;Acc:Q9SI58]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.