CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol

Predictor Summary:

nucleus 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG97977	Soybean	cytosol	96.93	86.67
KRH30911	Soybean	cytosol	96.71	86.47
PGSC0003DMT400041978	Potato	cytosol	78.51	70.06
Solyc06g053800.1.1	Tomato	cytosol	77.41	69.9
PGSC0003DMT400034496	Potato	cytosol	76.97	68.69
Solyc11g011780.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	75.0	68.13
HORVU1Hr1G050300.1	Barley	cytosol, mitochondrion	7.02	59.26
AT2G03820.1	Thale cress	cytosol	66.45	58.72
CDY07477	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	64.69	58.07
CDY39255	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	64.69	58.07
GSMUA_Achr3P21620_001	Banana	cytosol	24.56	57.73
Bra004140.1-P	Field mustard	cytosol	65.35	57.64
CDY22138	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	63.6	56.97
Bra040033.1-P	Field mustard	cytosol	63.16	56.58
TraesCS1A01G192300.1	Wheat	plastid	57.24	50.1
TraesCS1D01G195700.1	Wheat	unclear	57.02	49.9
TraesCS1B01G207100.1	Wheat	plastid	56.58	49.81
EER91888	Sorghum	plastid	56.36	48.95
VIT_08s0007g08820.t01	Wine grape	extracellular	8.33	48.72
Os10t0573900-01	Rice	nucleus	55.7	48.57
Zm00001d030040_P001	Maize	extracellular	55.7	48.38
Zm00001d047039_P001	Maize	cytosol, nucleus, plastid, vacuole	55.26	48.0
TraesCS3B01G558700.1	Wheat	cytosol, plastid	41.67	39.83
TraesCS3D01G503800.1	Wheat	plastid	39.47	39.82
TraesCS3A01G496100.1	Wheat	cytosol, plastid	41.01	39.2
TraesCS3B01G558900.1	Wheat	cytosol, plastid	40.79	38.99
OQU88218	Sorghum	plastid	36.4	35.39
Zm00001d011822_P001	Maize	cytosol	26.75	30.12

Protein Annotations

MapMan:17.1.2.2.2.5	EMBL:ACUP02010335	EnsemblPlantsGene:GLYMA_17G081100	GO:GO:0000055	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006810
GO:GO:0008150	GO:GO:0015031	GO:GO:0043023	UniProt:K7MKJ8	EnsemblPlants:KRH03172	ProteinID:KRH03172
ProteinID:KRH03172.1	InterPro:NMD3	PFAM:PF04981	PANTHER:PTHR12746	UniParc:UPI0002953BD0	SEG:seg

Description

hypothetical protein

Coordinates

chr17:-:6308741..6310141

Molecular Weight (calculated)

52320.4 Da

IEP (calculated)

8.332

GRAVY (calculated)

-0.347

Length

456 amino acids

Sequence
(BLAST)

001: MAQESGMFMV NQTIGSVLCC KCGIPMQPNA AKMCVKCLRS EVDITEGLLK CLVLVHCPEC ESYLQPPRSW VKLQLESKEL LTFCLKKLQK NLNSNKVRLV
101: HAEFIWTEPH SRRVKVKVKV QKEVLNGAIL EQSYPVEYVQ QEHMCESCSR VQANPDQWVA AVQLRQHVSH RRTFFYLEQL ILKHGAAATA IRIKQMEQGI
201: DFFFSNRRKV APLRSHHDKQ LVSHDPKSNN YNYKYTFSVE ISPICREDLI CVPPRVAAGL GNIGPLVICT KVTNSIALLD PFTLRHCFID ADQYWRASFK
301: SLLTSRQLVE YIVLDVETVS SEVTIGDTKY RLADAQVARI SDFGKNDTIF NIKTHLGHLL NPGDYALGYD LCGANSNDME LDKYKGHIPE AILIKKSYEE
401: KHQKKRGKPR SWKLKSLEME VDDKGRVDQG KMVSEYEQFI QDLEENPEMR FNISLY

Best Arabidopsis Sequence Match ( AT2G03820.1 )
(BLAST)

001: MSVMDESGMF NVQQTIGSVL CCKCGVPMAP NAANMCVNCL RSEVDITEGL QKSIQIFYCP ECTCYLQPPK TWIKCQWESK ELLTFCIKRL KNLNKVKLKN
101: AEFVWTEPHS KRIKVKLTVQ AEVLNGAVLE QSYPVEYTVR DNLCESCSRF QANPDQWVAS IQLRQHVSHR RTFFYLEQLI LRHDAASRAI RIQQVDQGID
201: FFFGNKSHAN SFVEFLRKVV PIEYRQDQQL VSHDVKSSLY NYKYTYSVKI CPVCREDLVC LPSKVASGLG NLGPLVVCTK VSDNITLLDP RTLRCAFLDA
301: RQYWRSGFRS ALTSRQLVKY FVFDVEPPVG EATVGGQKYA LSYVQIARES DIGKMFYVQT HLGHILKPGD QALGYDIYGA NVNDNEMEKY RLSVKNGLPE
401: AILIKKCYEE QRERKQKKSR NWKLKSLPME MDDSRGRVDP EKTDKEYEEF LRDLEENPEL RFNISLYRDK DYQASETASM TDGEGAPSVP IEELLADLDL
501: SFEEEDDDDE DDMAAE

Arabidopsis Description

Nonsense-mediated mRNA decay NMD3 family protein [Source:UniProtKB/TrEMBL;Acc:Q9SI58]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.