Subcellular Localization
min:
: max
Winner_takes_all: vacuole, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- plasma membrane 1
- golgi 1
- nucleus 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER91888 | Sorghum | plastid | 94.86 | 94.86 |
| Zm00001d030040_P001 | Maize | extracellular | 94.67 | 94.67 |
| HORVU1Hr1G050300.1 | Barley | cytosol, mitochondrion | 9.14 | 88.89 |
| TraesCS1D01G195700.1 | Wheat | unclear | 86.48 | 87.14 |
| TraesCS1A01G192300.1 | Wheat | plastid | 86.29 | 86.95 |
| TraesCS1B01G207100.1 | Wheat | plastid | 84.95 | 86.1 |
| Os10t0573900-01 | Rice | nucleus | 85.71 | 86.04 |
| GSMUA_Achr3P21620_001 | Banana | cytosol | 23.62 | 63.92 |
| Solyc06g053800.1.1 | Tomato | cytosol | 53.71 | 55.84 |
| KRH03172 | Soybean | cytosol, endoplasmic reticulum | 48.0 | 55.26 |
| PGSC0003DMT400041978 | Potato | cytosol | 53.71 | 55.19 |
| KRG97977 | Soybean | cytosol | 52.19 | 53.73 |
| KRH30911 | Soybean | cytosol | 52.19 | 53.73 |
| PGSC0003DMT400034496 | Potato | cytosol | 51.62 | 53.03 |
| Solyc11g011780.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 50.48 | 52.79 |
| CDY07477 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 49.52 | 51.18 |
| CDY39255 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 49.33 | 50.98 |
| AT2G03820.1 | Thale cress | cytosol | 50.1 | 50.97 |
| Bra004140.1-P | Field mustard | cytosol | 49.9 | 50.68 |
| Bra040033.1-P | Field mustard | cytosol | 48.95 | 50.49 |
| CDY22138 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 48.38 | 49.9 |
| VIT_04s0043g00250.t01 | Wine grape | golgi | 52.95 | 45.28 |
| VIT_08s0007g08810.t01 | Wine grape | cytosol | 44.57 | 44.91 |
| Zm00001d011822_P001 | Maize | cytosol | 31.81 | 41.23 |
| VIT_08s0007g08820.t01 | Wine grape | extracellular | 5.33 | 35.9 |
| VIT_08s0007g08500.t01 | Wine grape | cytosol | 20.0 | 28.23 |
Protein Annotations
| EnsemblPlants:Zm00001d047039_P001 | EnsemblPlants:Zm00001d047039_T001 | EnsemblPlantsGene:Zm00001d047039 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015031 | InterPro:NMD3 |
| ncoils:Coil | PANTHER:PTHR12746 | PFAM:PF04981 | ProteinID:AQL05458.1 | SEG:seg | SignalP:SignalP-noTM |
| UniParc:UPI000220BB49 | UniProt:K7VGK6 | MapMan:17.1.2.2.2.5 | : | : | : |
Description
nonsense-mediated mRNA decay NMD3 family protein
Coordinates
chr9:-:116302972..116304549
Molecular Weight (calculated)
58967.9 Da
IEP (calculated)
6.509
GRAVY (calculated)
-0.281
Length
525 amino acids
Sequence
(BLAST)
(BLAST)
001: MQPGSAPAAG GTGMFVPAAT AGTVLCCMCG VSMQPNPANM CARCLRARVD ITEGVPRHAA VVYCPDCSSY LQPPRSWLRA APESPELMQI LLRRINRPLA
101: RLRVSLSGAE FVFSEPHSKR LRLKLRLRRE VLHGIVLEQT HPVEFVVHDR LCDSCSRAQA NPDQWVAVVQ LRQHVPHRRT FLYLEQLLLK HGQASLAIRV
201: AAAPEGLDFF FGSRSHAARL VDFVATVAPI QTQTAKQLVS HDTKSSVYNY KYTFSVEICP ICREDLIALS PQASRDMGGL GPLVLCVKVT NAIALLDPLT
301: LRVHHLEEKK YRVYNFKAAL TSKQLVEYIV LDIEPESPEI CIDGSRYQLA YAQVARMSDF GKNDAIFTVR THLGHLLNPG DHALGYDLYG ANLNDDDMDM
401: AMTRYSLPEV VLVKKSYEKR PRTRRWKLKR LPVEEDAANK AKGEEEKRLD EYEAFLRDLE VDSGMWSKMN LYKNEDYRSE MASTVGDDIP TVPIEELIED
501: LTLGDDEEDE GKETVEGNTH TGMVE
101: RLRVSLSGAE FVFSEPHSKR LRLKLRLRRE VLHGIVLEQT HPVEFVVHDR LCDSCSRAQA NPDQWVAVVQ LRQHVPHRRT FLYLEQLLLK HGQASLAIRV
201: AAAPEGLDFF FGSRSHAARL VDFVATVAPI QTQTAKQLVS HDTKSSVYNY KYTFSVEICP ICREDLIALS PQASRDMGGL GPLVLCVKVT NAIALLDPLT
301: LRVHHLEEKK YRVYNFKAAL TSKQLVEYIV LDIEPESPEI CIDGSRYQLA YAQVARMSDF GKNDAIFTVR THLGHLLNPG DHALGYDLYG ANLNDDDMDM
401: AMTRYSLPEV VLVKKSYEKR PRTRRWKLKR LPVEEDAANK AKGEEEKRLD EYEAFLRDLE VDSGMWSKMN LYKNEDYRSE MASTVGDDIP TVPIEELIED
501: LTLGDDEEDE GKETVEGNTH TGMVE
001: MSVMDESGMF NVQQTIGSVL CCKCGVPMAP NAANMCVNCL RSEVDITEGL QKSIQIFYCP ECTCYLQPPK TWIKCQWESK ELLTFCIKRL KNLNKVKLKN
101: AEFVWTEPHS KRIKVKLTVQ AEVLNGAVLE QSYPVEYTVR DNLCESCSRF QANPDQWVAS IQLRQHVSHR RTFFYLEQLI LRHDAASRAI RIQQVDQGID
201: FFFGNKSHAN SFVEFLRKVV PIEYRQDQQL VSHDVKSSLY NYKYTYSVKI CPVCREDLVC LPSKVASGLG NLGPLVVCTK VSDNITLLDP RTLRCAFLDA
301: RQYWRSGFRS ALTSRQLVKY FVFDVEPPVG EATVGGQKYA LSYVQIARES DIGKMFYVQT HLGHILKPGD QALGYDIYGA NVNDNEMEKY RLSVKNGLPE
401: AILIKKCYEE QRERKQKKSR NWKLKSLPME MDDSRGRVDP EKTDKEYEEF LRDLEENPEL RFNISLYRDK DYQASETASM TDGEGAPSVP IEELLADLDL
501: SFEEEDDDDE DDMAAE
101: AEFVWTEPHS KRIKVKLTVQ AEVLNGAVLE QSYPVEYTVR DNLCESCSRF QANPDQWVAS IQLRQHVSHR RTFFYLEQLI LRHDAASRAI RIQQVDQGID
201: FFFGNKSHAN SFVEFLRKVV PIEYRQDQQL VSHDVKSSLY NYKYTYSVKI CPVCREDLVC LPSKVASGLG NLGPLVVCTK VSDNITLLDP RTLRCAFLDA
301: RQYWRSGFRS ALTSRQLVKY FVFDVEPPVG EATVGGQKYA LSYVQIARES DIGKMFYVQT HLGHILKPGD QALGYDIYGA NVNDNEMEKY RLSVKNGLPE
401: AILIKKCYEE QRERKQKKSR NWKLKSLPME MDDSRGRVDP EKTDKEYEEF LRDLEENPEL RFNISLYRDK DYQASETASM TDGEGAPSVP IEELLADLDL
501: SFEEEDDDDE DDMAAE
Arabidopsis Description
Nonsense-mediated mRNA decay NMD3 family protein [Source:UniProtKB/TrEMBL;Acc:Q9SI58]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.