Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- nucleus 1
- mitochondrion 1
- cytosol 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G195700.1 | Wheat | unclear | 99.81 | 99.81 |
| TraesCS1B01G207100.1 | Wheat | plastid | 96.35 | 96.91 |
| HORVU1Hr1G050300.1 | Barley | cytosol, mitochondrion | 9.6 | 92.59 |
| EER91888 | Sorghum | plastid | 87.91 | 87.24 |
| Zm00001d047039_P001 | Maize | cytosol, nucleus, plastid, vacuole | 86.95 | 86.29 |
| Zm00001d030040_P001 | Maize | extracellular | 86.76 | 86.1 |
| Os10t0573900-01 | Rice | nucleus | 85.6 | 85.28 |
| GSMUA_Achr3P21620_001 | Banana | cytosol | 24.57 | 65.98 |
| KRH03172 | Soybean | cytosol, endoplasmic reticulum | 50.1 | 57.24 |
| Solyc06g053800.1.1 | Tomato | cytosol | 55.09 | 56.83 |
| PGSC0003DMT400041978 | Potato | cytosol | 54.89 | 55.97 |
| KRG97977 | Soybean | cytosol | 54.7 | 55.88 |
| KRH30911 | Soybean | cytosol | 54.7 | 55.88 |
| PGSC0003DMT400034496 | Potato | cytosol | 53.74 | 54.79 |
| Solyc11g011780.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 52.59 | 54.58 |
| CDY07477 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 52.78 | 54.13 |
| CDY39255 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 52.59 | 53.94 |
| Bra004140.1-P | Field mustard | cytosol | 52.98 | 53.38 |
| TraesCS3A01G496100.1 | Wheat | cytosol, plastid | 48.75 | 53.25 |
| AT2G03820.1 | Thale cress | cytosol | 52.59 | 53.1 |
| Bra040033.1-P | Field mustard | cytosol | 51.82 | 53.05 |
| CDY22138 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 51.63 | 52.85 |
| VIT_04s0043g00250.t01 | Wine grape | golgi | 55.09 | 46.74 |
| VIT_08s0007g08810.t01 | Wine grape | cytosol | 45.49 | 45.49 |
| VIT_08s0007g08820.t01 | Wine grape | extracellular | 5.57 | 37.18 |
| VIT_08s0007g08500.t01 | Wine grape | cytosol | 20.54 | 28.76 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G192300.1 | EnsemblPlantsGene:TraesCS1A01G192300 | InterPro:NMD3 | PANTHER:PTHR12746 | PFAM:PF04981 | SEG:seg |
| MapMan:17.1.2.2.2.5 | : | : | : | : | : |
Description
No Description!
Coordinates
chr1A:-:347634228..347635793
Molecular Weight (calculated)
58669.6 Da
IEP (calculated)
6.453
GRAVY (calculated)
-0.306
Length
521 amino acids
Sequence
(BLAST)
(BLAST)
001: MMPGSAPPAA GSGMFVPTQT AGTVLCCICG VSMQPNPANM CARCLRARVD ITEGVPRNAA VVYCPDCFSY LQPPRSWLRA GPESPELLQI LLRRLKHPLA
101: RLKVSLSGAE FVFSEPHSKR LRLKLRLRRE VLNGIVLEQT HPVEFVVHDR LCDSCARAQA NPDQWVAVVQ LRQHVPHRRT FLYLEQLLIK HGQAALAIRV
201: ASAPGGLDFF FGSRSHAARL VDFLGTVAPI QTNTAKQLVS HDTKSFIYNY KYTFSVEICP ICREDLIALS PKASRDLGGL GPLVLCTKVT NAIALLDPLT
301: LRVHHLEEKK YRVYNFKAAL TSKQLVQYMV LDIETESPEI TIDGSRYQLA YAQVARMSDF GKNDTVFTVR THLGHRLNPG DLALGYDLYG ANMNDDDMDK
401: ALLRQNLPEV VLVKKSYEKR PRTRRWKLKR LPVEEDLGNK AKGEEERREN EYDMFVRDLE SDPELRFGIN LYKNEDYRSE MASTIGDDVP TVPIEELIED
501: LTLGDDEDEE EEEGADAGMV E
101: RLKVSLSGAE FVFSEPHSKR LRLKLRLRRE VLNGIVLEQT HPVEFVVHDR LCDSCARAQA NPDQWVAVVQ LRQHVPHRRT FLYLEQLLIK HGQAALAIRV
201: ASAPGGLDFF FGSRSHAARL VDFLGTVAPI QTNTAKQLVS HDTKSFIYNY KYTFSVEICP ICREDLIALS PKASRDLGGL GPLVLCTKVT NAIALLDPLT
301: LRVHHLEEKK YRVYNFKAAL TSKQLVQYMV LDIETESPEI TIDGSRYQLA YAQVARMSDF GKNDTVFTVR THLGHRLNPG DLALGYDLYG ANMNDDDMDK
401: ALLRQNLPEV VLVKKSYEKR PRTRRWKLKR LPVEEDLGNK AKGEEERREN EYDMFVRDLE SDPELRFGIN LYKNEDYRSE MASTIGDDVP TVPIEELIED
501: LTLGDDEDEE EEEGADAGMV E
001: MSVMDESGMF NVQQTIGSVL CCKCGVPMAP NAANMCVNCL RSEVDITEGL QKSIQIFYCP ECTCYLQPPK TWIKCQWESK ELLTFCIKRL KNLNKVKLKN
101: AEFVWTEPHS KRIKVKLTVQ AEVLNGAVLE QSYPVEYTVR DNLCESCSRF QANPDQWVAS IQLRQHVSHR RTFFYLEQLI LRHDAASRAI RIQQVDQGID
201: FFFGNKSHAN SFVEFLRKVV PIEYRQDQQL VSHDVKSSLY NYKYTYSVKI CPVCREDLVC LPSKVASGLG NLGPLVVCTK VSDNITLLDP RTLRCAFLDA
301: RQYWRSGFRS ALTSRQLVKY FVFDVEPPVG EATVGGQKYA LSYVQIARES DIGKMFYVQT HLGHILKPGD QALGYDIYGA NVNDNEMEKY RLSVKNGLPE
401: AILIKKCYEE QRERKQKKSR NWKLKSLPME MDDSRGRVDP EKTDKEYEEF LRDLEENPEL RFNISLYRDK DYQASETASM TDGEGAPSVP IEELLADLDL
501: SFEEEDDDDE DDMAAE
101: AEFVWTEPHS KRIKVKLTVQ AEVLNGAVLE QSYPVEYTVR DNLCESCSRF QANPDQWVAS IQLRQHVSHR RTFFYLEQLI LRHDAASRAI RIQQVDQGID
201: FFFGNKSHAN SFVEFLRKVV PIEYRQDQQL VSHDVKSSLY NYKYTYSVKI CPVCREDLVC LPSKVASGLG NLGPLVVCTK VSDNITLLDP RTLRCAFLDA
301: RQYWRSGFRS ALTSRQLVKY FVFDVEPPVG EATVGGQKYA LSYVQIARES DIGKMFYVQT HLGHILKPGD QALGYDIYGA NVNDNEMEKY RLSVKNGLPE
401: AILIKKCYEE QRERKQKKSR NWKLKSLPME MDDSRGRVDP EKTDKEYEEF LRDLEENPEL RFNISLYRDK DYQASETASM TDGEGAPSVP IEELLADLDL
501: SFEEEDDDDE DDMAAE
Arabidopsis Description
Nonsense-mediated mRNA decay NMD3 family protein [Source:UniProtKB/TrEMBL;Acc:Q9SI58]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.