Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY39255 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 88.37 | 89.76 |
| CDY07477 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 87.98 | 89.37 |
| Bra004140.1-P | Field mustard | cytosol | 88.18 | 88.01 |
| CDY22138 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 81.01 | 82.12 |
| Bra040033.1-P | Field mustard | cytosol | 80.81 | 81.93 |
| KRH03172 | Soybean | cytosol, endoplasmic reticulum | 58.72 | 66.45 |
| Solyc06g053800.1.1 | Tomato | cytosol | 64.73 | 66.14 |
| Solyc11g011780.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 64.15 | 65.94 |
| PGSC0003DMT400041978 | Potato | cytosol | 65.12 | 65.75 |
| KRG97977 | Soybean | cytosol | 64.92 | 65.69 |
| PGSC0003DMT400034496 | Potato | cytosol | 64.73 | 65.36 |
| KRH30911 | Soybean | cytosol | 64.53 | 65.29 |
| HORVU1Hr1G050300.1 | Barley | cytosol, mitochondrion | 6.78 | 64.81 |
| GSMUA_Achr3P21620_001 | Banana | cytosol | 23.26 | 61.86 |
| TraesCS1D01G195700.1 | Wheat | unclear | 53.29 | 52.78 |
| TraesCS1A01G192300.1 | Wheat | plastid | 53.1 | 52.59 |
| TraesCS1B01G207100.1 | Wheat | plastid | 52.71 | 52.51 |
| Os10t0573900-01 | Rice | nucleus | 51.55 | 50.86 |
| EER91888 | Sorghum | plastid | 51.74 | 50.86 |
| Zm00001d030040_P001 | Maize | extracellular | 51.36 | 50.48 |
| Zm00001d047039_P001 | Maize | cytosol, nucleus, plastid, vacuole | 50.97 | 50.1 |
| TraesCS3B01G558700.1 | Wheat | cytosol, plastid | 38.76 | 41.93 |
| TraesCS3D01G503800.1 | Wheat | plastid | 36.24 | 41.37 |
| TraesCS3A01G496100.1 | Wheat | cytosol, plastid | 37.6 | 40.67 |
| TraesCS3B01G558900.1 | Wheat | cytosol, plastid | 37.6 | 40.67 |
| OQU88218 | Sorghum | plastid | 33.72 | 37.1 |
| VIT_08s0007g08500.t01 | Wine grape | cytosol | 24.61 | 34.14 |
| Zm00001d011822_P001 | Maize | cytosol | 24.22 | 30.86 |
Protein Annotations
| MapMan:17.1.2.2.2.5 | EntrezGene:814908 | ProteinID:AAD24816.1 | ProteinID:AEC05754.1 | ArrayExpress:AT2G03820 | EnsemblPlantsGene:AT2G03820 |
| RefSeq:AT2G03820 | TAIR:AT2G03820 | RefSeq:AT2G03820-TAIR-G | EnsemblPlants:AT2G03820.1 | TAIR:AT2G03820.1 | EMBL:AY099778 |
| EMBL:AY128878 | Unigene:At.20649 | ncoils:Coil | GO:GO:0000055 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 |
| GO:GO:0006611 | GO:GO:0006810 | GO:GO:0007029 | GO:GO:0008150 | GO:GO:0009834 | GO:GO:0009987 |
| GO:GO:0015031 | GO:GO:0016043 | GO:GO:0043023 | InterPro:NMD3 | RefSeq:NP_178476.1 | PFAM:PF04981 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 |
| PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR12746 | UniProt:Q9SI58 |
| UniParc:UPI000009E8B0 | SEG:seg | : | : | : | : |
Description
Nonsense-mediated mRNA decay NMD3 family protein [Source:UniProtKB/TrEMBL;Acc:Q9SI58]
Coordinates
chr2:-:1164843..1167115
Molecular Weight (calculated)
59296.7 Da
IEP (calculated)
5.459
GRAVY (calculated)
-0.458
Length
516 amino acids
Sequence
(BLAST)
(BLAST)
001: MSVMDESGMF NVQQTIGSVL CCKCGVPMAP NAANMCVNCL RSEVDITEGL QKSIQIFYCP ECTCYLQPPK TWIKCQWESK ELLTFCIKRL KNLNKVKLKN
101: AEFVWTEPHS KRIKVKLTVQ AEVLNGAVLE QSYPVEYTVR DNLCESCSRF QANPDQWVAS IQLRQHVSHR RTFFYLEQLI LRHDAASRAI RIQQVDQGID
201: FFFGNKSHAN SFVEFLRKVV PIEYRQDQQL VSHDVKSSLY NYKYTYSVKI CPVCREDLVC LPSKVASGLG NLGPLVVCTK VSDNITLLDP RTLRCAFLDA
301: RQYWRSGFRS ALTSRQLVKY FVFDVEPPVG EATVGGQKYA LSYVQIARES DIGKMFYVQT HLGHILKPGD QALGYDIYGA NVNDNEMEKY RLSVKNGLPE
401: AILIKKCYEE QRERKQKKSR NWKLKSLPME MDDSRGRVDP EKTDKEYEEF LRDLEENPEL RFNISLYRDK DYQASETASM TDGEGAPSVP IEELLADLDL
501: SFEEEDDDDE DDMAAE
101: AEFVWTEPHS KRIKVKLTVQ AEVLNGAVLE QSYPVEYTVR DNLCESCSRF QANPDQWVAS IQLRQHVSHR RTFFYLEQLI LRHDAASRAI RIQQVDQGID
201: FFFGNKSHAN SFVEFLRKVV PIEYRQDQQL VSHDVKSSLY NYKYTYSVKI CPVCREDLVC LPSKVASGLG NLGPLVVCTK VSDNITLLDP RTLRCAFLDA
301: RQYWRSGFRS ALTSRQLVKY FVFDVEPPVG EATVGGQKYA LSYVQIARES DIGKMFYVQT HLGHILKPGD QALGYDIYGA NVNDNEMEKY RLSVKNGLPE
401: AILIKKCYEE QRERKQKKSR NWKLKSLPME MDDSRGRVDP EKTDKEYEEF LRDLEENPEL RFNISLYRDK DYQASETASM TDGEGAPSVP IEELLADLDL
501: SFEEEDDDDE DDMAAE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.