CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 6
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G496100.1	Wheat	cytosol, plastid	55.44	54.51
TraesCS3B01G558900.1	Wheat	cytosol, plastid	55.22	54.3
TraesCS3B01G558700.1	Wheat	cytosol, plastid	55.22	54.3
TraesCS3D01G503800.1	Wheat	plastid	51.39	53.32
HORVU1Hr1G050300.1	Barley	cytosol, mitochondrion	5.97	51.85
Zm00001d011822_P001	Maize	cytosol	38.81	44.94
EER91888	Sorghum	plastid	47.55	42.48
GSMUA_Achr3P21620_001	Banana	cytosol	16.2	39.18
KRH03172	Soybean	cytosol, endoplasmic reticulum	35.39	36.4
PGSC0003DMT400041978	Potato	cytosol	39.23	36.01
Solyc11g011780.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	38.38	35.86
Solyc06g053800.1.1	Tomato	cytosol	38.59	35.84
PGSC0003DMT400034496	Potato	cytosol	38.81	35.62
KRH30911	Soybean	cytosol	38.38	35.29
KRG97977	Soybean	cytosol	38.38	35.29
CDY39255	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	36.67	33.86
CDY07477	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	36.67	33.86
AT2G03820.1	Thale cress	cytosol	37.1	33.72
CDY22138	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	36.25	33.4
Bra004140.1-P	Field mustard	cytosol	36.67	33.27
Bra040033.1-P	Field mustard	cytosol	35.39	32.61
VIT_08s0007g08810.t01	Wine grape	cytosol	35.39	31.86
VIT_04s0043g00250.t01	Wine grape	golgi	38.59	29.48
VIT_08s0007g08500.t01	Wine grape	cytosol	15.99	20.16
VIT_08s0007g08820.t01	Wine grape	extracellular	3.2	19.23

Protein Annotations

EnsemblPlants:OQU88218	EnsemblPlantsGene:SORBI_3003G431800	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0006810	GO:GO:0008150	GO:GO:0015031	InterPro:NMD3	PANTHER:PTHR12746
PFAM:PF04981	ProteinID:OQU88218	ProteinID:OQU88218.1	SEG:seg	UniParc:UPI0009DC93BF	UniProt:A0A1W0W1E6
MapMan:17.1.2.2.2.5	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:73431193..73432602

Molecular Weight (calculated)

51526.7 Da

IEP (calculated)

6.956

GRAVY (calculated)

-0.125

Length

469 amino acids

Sequence
(BLAST)

001: MFLTPEQQAA GAASCTSICS TCGVVAPNPA NTCARCLRAR MAIAESVPRH NDVVRCPACS SYLRPPRSWI SAAPDSDELM QILLRRVDRH TARHGVAIAA
101: AELVAVPTEP PHSNSKRLVL RVRVRVRRET THGVTVEEDH VAEFAVHDRL CDACGRARAL AAGPDQQWSA VVQVRQRASH RRTLIHLDQQ IVRHGAADSA
201: VRVDGSSGGL DFYFASRSHA ARLVEFVSSV APARVVGTAR HRASPNSFKD AYSVELCAIC RDDLIFLPRE ACRALGGLGP LVLCVKVSKS IALLDTNTMR
301: LAVMGIAEYD RYMFEPLLSS SRLVEYVVLD VELDHREVHV SVLVHGSPYL MSWVQVARAS DLGKNDTVFT VKTHIGWRLN PGDYVLGYDL CNVNNQDLES
401: YGQRHELPDA VLVKKKYKRS AGKMMQEQDG SGSEGICAEI EELAMGIGCI ELNPSDEKEL DELLEDLSI

Best Arabidopsis Sequence Match ( AT2G03820.1 )
(BLAST)

001: MSVMDESGMF NVQQTIGSVL CCKCGVPMAP NAANMCVNCL RSEVDITEGL QKSIQIFYCP ECTCYLQPPK TWIKCQWESK ELLTFCIKRL KNLNKVKLKN
101: AEFVWTEPHS KRIKVKLTVQ AEVLNGAVLE QSYPVEYTVR DNLCESCSRF QANPDQWVAS IQLRQHVSHR RTFFYLEQLI LRHDAASRAI RIQQVDQGID
201: FFFGNKSHAN SFVEFLRKVV PIEYRQDQQL VSHDVKSSLY NYKYTYSVKI CPVCREDLVC LPSKVASGLG NLGPLVVCTK VSDNITLLDP RTLRCAFLDA
301: RQYWRSGFRS ALTSRQLVKY FVFDVEPPVG EATVGGQKYA LSYVQIARES DIGKMFYVQT HLGHILKPGD QALGYDIYGA NVNDNEMEKY RLSVKNGLPE
401: AILIKKCYEE QRERKQKKSR NWKLKSLPME MDDSRGRVDP EKTDKEYEEF LRDLEENPEL RFNISLYRDK DYQASETASM TDGEGAPSVP IEELLADLDL
501: SFEEEDDDDE DDMAAE

Arabidopsis Description

Nonsense-mediated mRNA decay NMD3 family protein [Source:UniProtKB/TrEMBL;Acc:Q9SI58]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.