Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY07477 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 98.07 | 99.8 |
| Bra040033.1-P | Field mustard | cytosol | 87.81 | 89.19 |
| AT2G03820.1 | Thale cress | cytosol | 88.01 | 88.18 |
| HORVU1Hr1G050300.1 | Barley | cytosol, mitochondrion | 6.96 | 66.67 |
| PGSC0003DMT400041978 | Potato | cytosol | 64.6 | 65.36 |
| KRH03172 | Soybean | cytosol, endoplasmic reticulum | 57.64 | 65.35 |
| Solyc06g053800.1.1 | Tomato | cytosol | 63.83 | 65.35 |
| Solyc11g011780.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 63.06 | 64.94 |
| PGSC0003DMT400034496 | Potato | cytosol | 63.64 | 64.38 |
| KRG97977 | Soybean | cytosol | 63.44 | 64.31 |
| KRH30911 | Soybean | cytosol | 63.06 | 63.92 |
| GSMUA_Achr3P21620_001 | Banana | cytosol | 22.44 | 59.79 |
| TraesCS1D01G195700.1 | Wheat | unclear | 53.38 | 52.98 |
| TraesCS1A01G192300.1 | Wheat | plastid | 53.38 | 52.98 |
| TraesCS1B01G207100.1 | Wheat | plastid | 52.61 | 52.51 |
| EER91888 | Sorghum | plastid | 51.84 | 51.05 |
| Zm00001d030040_P001 | Maize | extracellular | 51.45 | 50.67 |
| Os10t0573900-01 | Rice | nucleus | 51.06 | 50.48 |
| Zm00001d047039_P001 | Maize | cytosol, nucleus, plastid, vacuole | 50.68 | 49.9 |
| TraesCS3B01G558700.1 | Wheat | cytosol, plastid | 38.49 | 41.72 |
| TraesCS3D01G503800.1 | Wheat | plastid | 36.17 | 41.37 |
| TraesCS3A01G496100.1 | Wheat | cytosol, plastid | 37.52 | 40.67 |
| TraesCS3B01G558900.1 | Wheat | cytosol, plastid | 37.33 | 40.46 |
| OQU88218 | Sorghum | plastid | 33.27 | 36.67 |
| VIT_08s0007g08500.t01 | Wine grape | cytosol | 24.95 | 34.68 |
| Zm00001d011822_P001 | Maize | cytosol | 23.4 | 29.88 |
Protein Annotations
| EnsemblPlants:Bra004140.1 | EnsemblPlants:Bra004140.1-P | EnsemblPlantsGene:Bra004140 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015031 | InterPro:NMD3 |
| ncoils:Coil | PANTHER:PTHR12746 | PFAM:PF04981 | SEG:seg | UniParc:UPI0002541482 | UniProt:M4CIV6 |
| MapMan:17.1.2.2.2.5 | : | : | : | : | : |
Description
AT2G03820 (E=7e-262) | nonsense-mediated mRNA decay NMD3 family protein
Coordinates
chrA07:-:17051663..17053216
Molecular Weight (calculated)
59284.7 Da
IEP (calculated)
5.166
GRAVY (calculated)
-0.470
Length
517 amino acids
Sequence
(BLAST)
(BLAST)
001: MSAMDQDTGM FKVQQTIGSV LCCKCGVPMP PNAANMCVNC LRSEVDITEG LQKSIQIFYC PECGCYLQPP KTWIKAQWES KELLTFCIKR LKNLNKVKLK
101: NAEFVWTEPH SKRIKIKLTV QAEVLNGAVL EQSYPVEYTV RDNLCESCSR FQANPDQWVA SVQLRQHVSH RRTFFYLEQL ILRHDAASRA IRIQQVDQGI
201: DFFFGNKSHA NSFIEFLRKV VPIEYRQDQQ LVSHDVKSSL YNYKYTYSVK ICPICREDLI CLPSKVASGL GNLGPLVVCT KVSDNITILD PRTLRCAFLD
301: ARQYFRSGFR SALTSRQLVK YFVFDVEEPV GEATVGGQKY ALSYVQIARE SDLGNMFYVQ THLGHILKSG DQALGYDIYG ANVNDDEMEK YRLSVKNGLP
401: EAILIKKCYD EQRERKRGKP RAFTTKKLPM EMDESRGGRV DPEKMENEYE EFLRDLEENP ELRFNISLYK NKDYQESETA SMTDGEGAPT VPIEELLAEL
501: ELSEAEEEGD DEEDMDE
101: NAEFVWTEPH SKRIKIKLTV QAEVLNGAVL EQSYPVEYTV RDNLCESCSR FQANPDQWVA SVQLRQHVSH RRTFFYLEQL ILRHDAASRA IRIQQVDQGI
201: DFFFGNKSHA NSFIEFLRKV VPIEYRQDQQ LVSHDVKSSL YNYKYTYSVK ICPICREDLI CLPSKVASGL GNLGPLVVCT KVSDNITILD PRTLRCAFLD
301: ARQYFRSGFR SALTSRQLVK YFVFDVEEPV GEATVGGQKY ALSYVQIARE SDLGNMFYVQ THLGHILKSG DQALGYDIYG ANVNDDEMEK YRLSVKNGLP
401: EAILIKKCYD EQRERKRGKP RAFTTKKLPM EMDESRGGRV DPEKMENEYE EFLRDLEENP ELRFNISLYK NKDYQESETA SMTDGEGAPT VPIEELLAEL
501: ELSEAEEEGD DEEDMDE
001: MSVMDESGMF NVQQTIGSVL CCKCGVPMAP NAANMCVNCL RSEVDITEGL QKSIQIFYCP ECTCYLQPPK TWIKCQWESK ELLTFCIKRL KNLNKVKLKN
101: AEFVWTEPHS KRIKVKLTVQ AEVLNGAVLE QSYPVEYTVR DNLCESCSRF QANPDQWVAS IQLRQHVSHR RTFFYLEQLI LRHDAASRAI RIQQVDQGID
201: FFFGNKSHAN SFVEFLRKVV PIEYRQDQQL VSHDVKSSLY NYKYTYSVKI CPVCREDLVC LPSKVASGLG NLGPLVVCTK VSDNITLLDP RTLRCAFLDA
301: RQYWRSGFRS ALTSRQLVKY FVFDVEPPVG EATVGGQKYA LSYVQIARES DIGKMFYVQT HLGHILKPGD QALGYDIYGA NVNDNEMEKY RLSVKNGLPE
401: AILIKKCYEE QRERKQKKSR NWKLKSLPME MDDSRGRVDP EKTDKEYEEF LRDLEENPEL RFNISLYRDK DYQASETASM TDGEGAPSVP IEELLADLDL
501: SFEEEDDDDE DDMAAE
101: AEFVWTEPHS KRIKVKLTVQ AEVLNGAVLE QSYPVEYTVR DNLCESCSRF QANPDQWVAS IQLRQHVSHR RTFFYLEQLI LRHDAASRAI RIQQVDQGID
201: FFFGNKSHAN SFVEFLRKVV PIEYRQDQQL VSHDVKSSLY NYKYTYSVKI CPVCREDLVC LPSKVASGLG NLGPLVVCTK VSDNITLLDP RTLRCAFLDA
301: RQYWRSGFRS ALTSRQLVKY FVFDVEPPVG EATVGGQKYA LSYVQIARES DIGKMFYVQT HLGHILKPGD QALGYDIYGA NVNDNEMEKY RLSVKNGLPE
401: AILIKKCYEE QRERKQKKSR NWKLKSLPME MDDSRGRVDP EKTDKEYEEF LRDLEENPEL RFNISLYRDK DYQASETASM TDGEGAPSVP IEELLADLDL
501: SFEEEDDDDE DDMAAE
Arabidopsis Description
Nonsense-mediated mRNA decay NMD3 family protein [Source:UniProtKB/TrEMBL;Acc:Q9SI58]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.