CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG97977	Soybean	cytosol	98.04	98.04
KRH03172	Soybean	cytosol, endoplasmic reticulum	86.47	96.71
PGSC0003DMT400041978	Potato	cytosol	78.43	78.28
Solyc06g053800.1.1	Tomato	cytosol	77.25	78.02
PGSC0003DMT400034496	Potato	cytosol	75.29	75.15
Solyc11g011780.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	73.53	74.7
AT2G03820.1	Thale cress	cytosol	65.29	64.53
GSMUA_Achr3P21620_001	Banana	cytosol	24.51	64.43
CDY07477	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	63.33	63.58
CDY39255	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	63.33	63.58
Bra004140.1-P	Field mustard	cytosol	63.92	63.06
CDY22138	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	62.55	62.67
Bra040033.1-P	Field mustard	cytosol	61.57	61.69
HORVU1Hr1G050300.1	Barley	cytosol, mitochondrion	6.27	59.26
TraesCS1A01G192300.1	Wheat	plastid	55.88	54.7
TraesCS1D01G195700.1	Wheat	unclear	55.69	54.51
TraesCS1B01G207100.1	Wheat	plastid	55.1	54.25
EER91888	Sorghum	plastid	55.1	53.52
Zm00001d030040_P001	Maize	extracellular	54.51	52.95
Os10t0573900-01	Rice	nucleus	53.92	52.58
Zm00001d047039_P001	Maize	cytosol, nucleus, plastid, vacuole	53.73	52.19
VIT_08s0007g08820.t01	Wine grape	extracellular	7.65	50.0
TraesCS3B01G558700.1	Wheat	cytosol, plastid	39.61	42.35
TraesCS3D01G503800.1	Wheat	plastid	37.45	42.26
TraesCS3A01G496100.1	Wheat	cytosol, plastid	38.82	41.51
TraesCS3B01G558900.1	Wheat	cytosol, plastid	38.82	41.51
OQU88218	Sorghum	plastid	35.29	38.38
Zm00001d011822_P001	Maize	cytosol	25.29	31.85

Protein Annotations

EntrezGene:100799026	MapMan:17.1.2.2.2.5	EMBL:ACUP02007100	EnsemblPlantsGene:GLYMA_11G213900	GO:GO:0000055	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0006810	GO:GO:0008150	GO:GO:0015031	GO:GO:0043023	UniProt:I1LM96	EnsemblPlants:KRH30911
ProteinID:KRH30911	ProteinID:KRH30911.1	InterPro:NMD3	PFAM:PF04981	UniParc:UPI000233CFC1	SEG:seg

Description

hypothetical protein

Coordinates

chr11:+:30742157..30744576

Molecular Weight (calculated)

58503.2 Da

IEP (calculated)

6.711

GRAVY (calculated)

-0.426

Length

510 amino acids

Sequence
(BLAST)

001: MFGSSGMAQE SGMFMVNQTI GSVLCCKCGI PMQPNAANMC VKCLRSEVDI TEGLLKRLVL VHCPECESYL QPPRSWVKLQ LESKELLTFC LKKLQKNLNS
101: NKVRLVHAEF IWTEPHSRRV KVKVKVQKEV LNGAILEQSY PVEYVQQEHM CESCSRVQAN PDQWVAAVQL RQHVSHRRTF FYLEQLILKH GAAATAIRIK
201: QMEQGIDFFF SNRSHGVKFV EFIGKVSPVR SRHDKQLVSH DPKSNNYNYK YTFSVEISPI CREDLICLPP RVAVSLGNIG PLVICTKVTN SIALLDPFTL
301: RHCFIDADQY WRTSFKSLLT SRQLVEYIVL DVETVSSEVT IGGTKYRLAD AQVARVSDFG KNDTIFNIKT HLGHLLNPGD YALGYDLYGA NSNDMELDKY
401: KGHIPEAILI KKSYEEKHQK KRGKPRSWKL KSLEMEVDDK GRVDEDKMVS EYEQFIQDLE ENPEMRFNIS LYRNKEYKPS DGDESSVPLE ELLADLDLSE
501: HEDEEDNMTE

Best Arabidopsis Sequence Match ( AT2G03820.1 )
(BLAST)

001: MSVMDESGMF NVQQTIGSVL CCKCGVPMAP NAANMCVNCL RSEVDITEGL QKSIQIFYCP ECTCYLQPPK TWIKCQWESK ELLTFCIKRL KNLNKVKLKN
101: AEFVWTEPHS KRIKVKLTVQ AEVLNGAVLE QSYPVEYTVR DNLCESCSRF QANPDQWVAS IQLRQHVSHR RTFFYLEQLI LRHDAASRAI RIQQVDQGID
201: FFFGNKSHAN SFVEFLRKVV PIEYRQDQQL VSHDVKSSLY NYKYTYSVKI CPVCREDLVC LPSKVASGLG NLGPLVVCTK VSDNITLLDP RTLRCAFLDA
301: RQYWRSGFRS ALTSRQLVKY FVFDVEPPVG EATVGGQKYA LSYVQIARES DIGKMFYVQT HLGHILKPGD QALGYDIYGA NVNDNEMEKY RLSVKNGLPE
401: AILIKKCYEE QRERKQKKSR NWKLKSLPME MDDSRGRVDP EKTDKEYEEF LRDLEENPEL RFNISLYRDK DYQASETASM TDGEGAPSVP IEELLADLDL
501: SFEEEDDDDE DDMAAE

Arabidopsis Description

Nonsense-mediated mRNA decay NMD3 family protein [Source:UniProtKB/TrEMBL;Acc:Q9SI58]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.