Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g053800.1.1 | Tomato | cytosol | 94.13 | 95.25 |
| PGSC0003DMT400034496 | Potato | cytosol | 79.65 | 79.65 |
| KRH03172 | Soybean | cytosol, endoplasmic reticulum | 70.06 | 78.51 |
| KRH30911 | Soybean | cytosol | 78.28 | 78.43 |
| KRG97977 | Soybean | cytosol | 77.69 | 77.84 |
| VIT_04s0043g00250.t01 | Wine grape | golgi | 82.19 | 68.4 |
| VIT_08s0007g08810.t01 | Wine grape | cytosol | 67.12 | 65.83 |
| CDY39255 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 64.77 | 65.16 |
| AT2G03820.1 | Thale cress | cytosol | 65.75 | 65.12 |
| CDY07477 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 64.38 | 64.76 |
| Bra004140.1-P | Field mustard | cytosol | 65.36 | 64.6 |
| GSMUA_Achr3P21620_001 | Banana | cytosol | 24.27 | 63.92 |
| CDY22138 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 63.21 | 63.46 |
| Bra040033.1-P | Field mustard | cytosol | 63.01 | 63.26 |
| HORVU1Hr1G050300.1 | Barley | cytosol, mitochondrion | 6.26 | 59.26 |
| TraesCS1A01G192300.1 | Wheat | plastid | 55.97 | 54.89 |
| TraesCS1D01G195700.1 | Wheat | unclear | 55.97 | 54.89 |
| TraesCS1B01G207100.1 | Wheat | plastid | 55.58 | 54.83 |
| EER91888 | Sorghum | plastid | 55.97 | 54.48 |
| Zm00001d030040_P001 | Maize | extracellular | 55.38 | 53.9 |
| Zm00001d047039_P001 | Maize | cytosol, nucleus, plastid, vacuole | 55.19 | 53.71 |
| Os10t0573900-01 | Rice | nucleus | 54.21 | 52.96 |
| VIT_08s0007g08820.t01 | Wine grape | extracellular | 7.05 | 46.15 |
| TraesCS3B01G558700.1 | Wheat | cytosol, plastid | 40.12 | 42.98 |
| TraesCS3B01G558900.1 | Wheat | cytosol, plastid | 39.92 | 42.77 |
| TraesCS3D01G503800.1 | Wheat | plastid | 37.57 | 42.48 |
| TraesCS3A01G496100.1 | Wheat | cytosol, plastid | 39.53 | 42.35 |
| OQU88218 | Sorghum | plastid | 36.01 | 39.23 |
| Zm00001d011822_P001 | Maize | cytosol | 25.44 | 32.1 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400041978 | EnsemblPlantsGene:PGSC0003DMG400016281 | EntrezGene:102587719 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015031 | InterPro:NMD3 |
| ncoils:Coil | PANTHER:PTHR12746 | PFAM:PF04981 | PGSC:PGSC0003DMG400016281 | RefSeq:XP_006350665.1 | SEG:seg |
| UniParc:UPI0002966377 | UniProt:M1BCA6 | MapMan:17.1.2.2.2.5 | : | : | : |
Description
Nonsense-mediated mRNA decay protein [Source:PGSC_GENE;Acc:PGSC0003DMG400016281]
Coordinates
chr6:-:39931699..39934563
Molecular Weight (calculated)
58545.1 Da
IEP (calculated)
6.560
GRAVY (calculated)
-0.386
Length
511 amino acids
Sequence
(BLAST)
(BLAST)
001: MAQDTGMFTV HHTIGNVLCC KCGISMQPNA ANMCANCLRS EIDITEGLQK HVIICHCPEC DSYLQPPRTW IKAQLESKEL LTFCVKRLKN LNKVRLVQAE
101: FIWTEPHSKR IKVKLKVQKE VLHGAILEQA YTVEFVIQDQ MCEACTRVQA NPDQWVAAVQ LRQHVTHRRT FFYLEQLILK HDAASRAIMI KQMDQGIDMF
201: FSNRSHAVKF VEFIGKVVPS RSRNDKQLVS HDSKNNNYNY KYTFSVEISP VCREDLICLP PKVSNSLGNL GPLVICTKVS NHIALLDPFT LRNCFLDAEQ
301: YWRASFKSLL SSRLLVEYIV LDVEAVSTEV NIGGSKYALA DAQVARISDF GKNDTIFNVR THLGHLLNPG DYALGYDLYA TNSNDSELDK YKGFVLPDVI
401: LVKKSYEEKW QKKRGKPRSW KLKSLNMEID DNVKGRDHEE KMNSEYEQFL RDLEENPDLR FNISLYRNKE YQPSEMASVT DGDDAPSVPL EELLADLDLS
501: EAEVDNDSMR E
101: FIWTEPHSKR IKVKLKVQKE VLHGAILEQA YTVEFVIQDQ MCEACTRVQA NPDQWVAAVQ LRQHVTHRRT FFYLEQLILK HDAASRAIMI KQMDQGIDMF
201: FSNRSHAVKF VEFIGKVVPS RSRNDKQLVS HDSKNNNYNY KYTFSVEISP VCREDLICLP PKVSNSLGNL GPLVICTKVS NHIALLDPFT LRNCFLDAEQ
301: YWRASFKSLL SSRLLVEYIV LDVEAVSTEV NIGGSKYALA DAQVARISDF GKNDTIFNVR THLGHLLNPG DYALGYDLYA TNSNDSELDK YKGFVLPDVI
401: LVKKSYEEKW QKKRGKPRSW KLKSLNMEID DNVKGRDHEE KMNSEYEQFL RDLEENPDLR FNISLYRNKE YQPSEMASVT DGDDAPSVPL EELLADLDLS
501: EAEVDNDSMR E
001: MSVMDESGMF NVQQTIGSVL CCKCGVPMAP NAANMCVNCL RSEVDITEGL QKSIQIFYCP ECTCYLQPPK TWIKCQWESK ELLTFCIKRL KNLNKVKLKN
101: AEFVWTEPHS KRIKVKLTVQ AEVLNGAVLE QSYPVEYTVR DNLCESCSRF QANPDQWVAS IQLRQHVSHR RTFFYLEQLI LRHDAASRAI RIQQVDQGID
201: FFFGNKSHAN SFVEFLRKVV PIEYRQDQQL VSHDVKSSLY NYKYTYSVKI CPVCREDLVC LPSKVASGLG NLGPLVVCTK VSDNITLLDP RTLRCAFLDA
301: RQYWRSGFRS ALTSRQLVKY FVFDVEPPVG EATVGGQKYA LSYVQIARES DIGKMFYVQT HLGHILKPGD QALGYDIYGA NVNDNEMEKY RLSVKNGLPE
401: AILIKKCYEE QRERKQKKSR NWKLKSLPME MDDSRGRVDP EKTDKEYEEF LRDLEENPEL RFNISLYRDK DYQASETASM TDGEGAPSVP IEELLADLDL
501: SFEEEDDDDE DDMAAE
101: AEFVWTEPHS KRIKVKLTVQ AEVLNGAVLE QSYPVEYTVR DNLCESCSRF QANPDQWVAS IQLRQHVSHR RTFFYLEQLI LRHDAASRAI RIQQVDQGID
201: FFFGNKSHAN SFVEFLRKVV PIEYRQDQQL VSHDVKSSLY NYKYTYSVKI CPVCREDLVC LPSKVASGLG NLGPLVVCTK VSDNITLLDP RTLRCAFLDA
301: RQYWRSGFRS ALTSRQLVKY FVFDVEPPVG EATVGGQKYA LSYVQIARES DIGKMFYVQT HLGHILKPGD QALGYDIYGA NVNDNEMEKY RLSVKNGLPE
401: AILIKKCYEE QRERKQKKSR NWKLKSLPME MDDSRGRVDP EKTDKEYEEF LRDLEENPEL RFNISLYRDK DYQASETASM TDGEGAPSVP IEELLADLDL
501: SFEEEDDDDE DDMAAE
Arabidopsis Description
Nonsense-mediated mRNA decay NMD3 family protein [Source:UniProtKB/TrEMBL;Acc:Q9SI58]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.