Factsheet for Os10t0573900-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 3
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

nucleus: 26035336

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER91888	Sorghum	plastid	86.23	85.9
Zm00001d047039_P001	Maize	cytosol, nucleus, plastid, vacuole	86.04	85.71
TraesCS1D01G195700.1	Wheat	unclear	85.28	85.6
TraesCS1A01G192300.1	Wheat	plastid	85.28	85.6
Zm00001d030040_P001	Maize	extracellular	85.85	85.52
TraesCS1B01G207100.1	Wheat	plastid	84.51	85.33
HORVU1Hr1G050300.1	Barley	cytosol, mitochondrion	8.41	81.48
GSMUA_Achr3P21620_001	Banana	cytosol	24.86	67.01
KRH03172	Soybean	cytosol, endoplasmic reticulum	48.57	55.7
Solyc06g053800.1.1	Tomato	cytosol	52.96	54.85
PGSC0003DMT400041978	Potato	cytosol	52.96	54.21
KRG97977	Soybean	cytosol	52.77	54.12
KRH30911	Soybean	cytosol	52.58	53.92
Solyc11g011780.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	51.63	53.78
PGSC0003DMT400034496	Potato	cytosol	52.39	53.62
CDY07477	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	50.1	51.57
AT2G03820.1	Thale cress	cytosol	50.86	51.55
CDY39255	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	49.9	51.38
Bra004140.1-P	Field mustard	cytosol	50.48	51.06
Bra040033.1-P	Field mustard	cytosol	49.52	50.88
CDY22138	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	48.95	50.29
VIT_04s0043g00250.t01	Wine grape	golgi	53.15	45.28
VIT_08s0007g08810.t01	Wine grape	cytosol	43.59	43.76
VIT_08s0007g08820.t01	Wine grape	extracellular	5.93	39.74
VIT_08s0007g08500.t01	Wine grape	cytosol	19.69	27.69

Protein Annotations

MapMan:17.1.2.2.2.5	EntrezGene:4349477	ProteinID:ABB48015.1	EMBL:AK060642	ProteinID:BAF27310.1	ProteinID:BAT12180.1
ncoils:Coil	GO:GO:0000055	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006810	GO:GO:0008150	GO:GO:0015031
GO:GO:0043023	InterPro:NMD3	EnsemblPlantsGene:Os10g0573900	EnsemblPlants:Os10t0573900-01	PFAM:PF04981	PANTHER:PTHR12746
UniProt:Q336P7	UniParc:UPI00005E1FBE	RefSeq:XP_015614181.1	SEG:seg	:	:

Description

60S ribosomal subunit nuclear export adaptor NMD3NMD3 family protein. (Os10t0573900-01);Similar to Nonsense-mediated mRNA decay protein 3. (Os10t0573900-03)

Coordinates

chr10:-:22782354..22784358

Molecular Weight (calculated)

58774.7 Da

IEP (calculated)

6.599

GRAVY (calculated)

-0.245

Length

523 amino acids

Sequence
(BLAST)

001: MLPGSAAPAA GSGMFVPTQT VGTVLCCICG VAMQPNPANM CARCIRARVD ITEGVPRHAA VVYCPDCTSY LQPPRSWLRA GPESPELMQI LLRRLNRPLA
101: RLRVSLSAAE FVFSEPHSKR LRLKLRLRRE VFNAVVLEQT HPVEFTVHDR LCDACARAQS NPDQWVAVVQ LRQHVPHRRT FLYLEQLLLK HGQASLALRV
201: AAAPGGLDFF FGSRSHAARL VDFLATVAPV QTQTAKQLVS HDTKSNVYNY KHTFSVEICP ICREDLIALS PQVSRDLGGL GPIVLCIKVT NAIALLDPLT
301: LRVHHLEEKK YRVYNFKAAL TSKQLVEYIV LDIEHESPEI TIDGSRYQLA YAQVARVSDF GKNDTMFTVR THLGHLLNPG DLALGYDLYG ANLNDDDMDT
401: AMMRHSLPEV ILVKKSFAKR PRTRRWKLKR LPMEEDAVNK AKGELEKRAD EYEEFLRDLE HNSDIRFQID LYKDEDYRSE MASTIGDDVP TVPIEELIED
501: LSLGDDEEED EGGEGNQHAV MVG

Best Arabidopsis Sequence Match ( AT2G03820.1 )
(BLAST)

001: MSVMDESGMF NVQQTIGSVL CCKCGVPMAP NAANMCVNCL RSEVDITEGL QKSIQIFYCP ECTCYLQPPK TWIKCQWESK ELLTFCIKRL KNLNKVKLKN
101: AEFVWTEPHS KRIKVKLTVQ AEVLNGAVLE QSYPVEYTVR DNLCESCSRF QANPDQWVAS IQLRQHVSHR RTFFYLEQLI LRHDAASRAI RIQQVDQGID
201: FFFGNKSHAN SFVEFLRKVV PIEYRQDQQL VSHDVKSSLY NYKYTYSVKI CPVCREDLVC LPSKVASGLG NLGPLVVCTK VSDNITLLDP RTLRCAFLDA
301: RQYWRSGFRS ALTSRQLVKY FVFDVEPPVG EATVGGQKYA LSYVQIARES DIGKMFYVQT HLGHILKPGD QALGYDIYGA NVNDNEMEKY RLSVKNGLPE
401: AILIKKCYEE QRERKQKKSR NWKLKSLPME MDDSRGRVDP EKTDKEYEEF LRDLEENPEL RFNISLYRDK DYQASETASM TDGEGAPSVP IEELLADLDL
501: SFEEEDDDDE DDMAAE

Arabidopsis Description

Nonsense-mediated mRNA decay NMD3 family protein [Source:UniProtKB/TrEMBL;Acc:Q9SI58]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.