Factsheet for TraesCS1D01G195700.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

plastid 5
nucleus 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G192300.1	Wheat	plastid	99.81	99.81
TraesCS1B01G207100.1	Wheat	plastid	96.55	97.1
HORVU1Hr1G050300.1	Barley	cytosol, mitochondrion	9.6	92.59
EER91888	Sorghum	plastid	87.91	87.24
Zm00001d047039_P001	Maize	cytosol, nucleus, plastid, vacuole	87.14	86.48
Zm00001d030040_P001	Maize	extracellular	86.76	86.1
Os10t0573900-01	Rice	nucleus	85.6	85.28
GSMUA_Achr3P21620_001	Banana	cytosol	24.57	65.98
KRH03172	Soybean	cytosol, endoplasmic reticulum	49.9	57.02
Solyc06g053800.1.1	Tomato	cytosol	55.09	56.83
PGSC0003DMT400041978	Potato	cytosol	54.89	55.97
KRG97977	Soybean	cytosol	54.51	55.69
KRH30911	Soybean	cytosol	54.51	55.69
PGSC0003DMT400034496	Potato	cytosol	53.74	54.79
Solyc11g011780.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	52.59	54.58
CDY07477	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	52.78	54.13
CDY39255	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	52.59	53.94
Bra004140.1-P	Field mustard	cytosol	52.98	53.38
AT2G03820.1	Thale cress	cytosol	52.78	53.29
Bra040033.1-P	Field mustard	cytosol	52.02	53.24
CDY22138	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	51.82	53.05
TraesCS3D01G503800.1	Wheat	plastid	45.87	52.88
VIT_04s0043g00250.t01	Wine grape	golgi	55.09	46.74
VIT_08s0007g08810.t01	Wine grape	cytosol	45.49	45.49
VIT_08s0007g08820.t01	Wine grape	extracellular	5.57	37.18
VIT_08s0007g08500.t01	Wine grape	cytosol	20.54	28.76

Protein Annotations

EnsemblPlants:TraesCS1D01G195700.1	EnsemblPlantsGene:TraesCS1D01G195700	InterPro:NMD3	PANTHER:PTHR12746	PFAM:PF04981	SEG:seg
MapMan:17.1.2.2.2.5	:	:	:	:	:

Description

No Description!

Coordinates

chr1D:-:275137968..275139533

Molecular Weight (calculated)

58665.6 Da

IEP (calculated)

6.453

GRAVY (calculated)

-0.307

Length

521 amino acids

Sequence
(BLAST)

001: MMPGSAPPAA GSGMFVPTQT AGTVLCCICG VSMQPNPANM CARCLRARVD ITEGVPRNAA VVYCPDCFSY LQPPRSWLRA GPESPELLQI LLRRLKHPLA
101: RLKVSLSGAE FVFSEPHSKR LRLKLRLRRE VLNGIVLEQT HPVEFVVHDR LCDSCARAQA NPDQWVAVVQ LRQHVPHRRT FLYLEQLLIK HGQAALAIRV
201: ASAPGGLDFF FGSRSHAARL VDFLGTVAPI QTNTAKQLVS HDTKSFIYNY KYTFSVEICP ICREDLIALS PKASRDLGGL GPLVLCTKVT NAIALLDPLT
301: LRVHHLEEKK YRVYNFKAAL TSKQLVQYMV LDIEPESPEI TIDGSRYQLA YAQVARMSDF GKNDTVFTVR THLGHRLNPG DLALGYDLYG ANMNDDDMDK
401: ALLRQNLPEV VLVKKSYEKR PRTRRWKLKR LPVEEDLGNK AKGEEERREN EYDMFVRDLE SDPELRFGIN LYKNEDYRSE MASTIGDDVP TVPIEELIED
501: LTLGDDEDEE EEEGADAGMV E

Best Arabidopsis Sequence Match ( AT2G03820.1 )
(BLAST)

001: MSVMDESGMF NVQQTIGSVL CCKCGVPMAP NAANMCVNCL RSEVDITEGL QKSIQIFYCP ECTCYLQPPK TWIKCQWESK ELLTFCIKRL KNLNKVKLKN
101: AEFVWTEPHS KRIKVKLTVQ AEVLNGAVLE QSYPVEYTVR DNLCESCSRF QANPDQWVAS IQLRQHVSHR RTFFYLEQLI LRHDAASRAI RIQQVDQGID
201: FFFGNKSHAN SFVEFLRKVV PIEYRQDQQL VSHDVKSSLY NYKYTYSVKI CPVCREDLVC LPSKVASGLG NLGPLVVCTK VSDNITLLDP RTLRCAFLDA
301: RQYWRSGFRS ALTSRQLVKY FVFDVEPPVG EATVGGQKYA LSYVQIARES DIGKMFYVQT HLGHILKPGD QALGYDIYGA NVNDNEMEKY RLSVKNGLPE
401: AILIKKCYEE QRERKQKKSR NWKLKSLPME MDDSRGRVDP EKTDKEYEEF LRDLEENPEL RFNISLYRDK DYQASETASM TDGEGAPSVP IEELLADLDL
501: SFEEEDDDDE DDMAAE

Arabidopsis Description

Nonsense-mediated mRNA decay NMD3 family protein [Source:UniProtKB/TrEMBL;Acc:Q9SI58]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.