Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 3
- cytosol 2
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc11g011780.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 96.48 | 98.21 |
| PGSC0003DMT400041978 | Potato | cytosol | 79.65 | 79.65 |
| KRH03172 | Soybean | cytosol, endoplasmic reticulum | 68.69 | 76.97 |
| KRH30911 | Soybean | cytosol | 75.15 | 75.29 |
| KRG97977 | Soybean | cytosol | 74.76 | 74.9 |
| AT2G03820.1 | Thale cress | cytosol | 65.36 | 64.73 |
| GSMUA_Achr3P21620_001 | Banana | cytosol | 24.46 | 64.43 |
| CDY07477 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 63.99 | 64.37 |
| CDY39255 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 63.6 | 63.98 |
| Bra004140.1-P | Field mustard | cytosol | 64.38 | 63.64 |
| VIT_04s0043g00250.t01 | Wine grape | golgi | 75.73 | 63.03 |
| CDY22138 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 61.25 | 61.49 |
| VIT_08s0007g08810.t01 | Wine grape | cytosol | 62.62 | 61.42 |
| HORVU1Hr1G050300.1 | Barley | cytosol, mitochondrion | 6.46 | 61.11 |
| Bra040033.1-P | Field mustard | cytosol | 60.86 | 61.1 |
| TraesCS1B01G207100.1 | Wheat | plastid | 54.6 | 53.86 |
| TraesCS1A01G192300.1 | Wheat | plastid | 54.79 | 53.74 |
| TraesCS1D01G195700.1 | Wheat | unclear | 54.79 | 53.74 |
| Os10t0573900-01 | Rice | nucleus | 53.62 | 52.39 |
| EER91888 | Sorghum | plastid | 53.82 | 52.38 |
| Zm00001d030040_P001 | Maize | extracellular | 53.42 | 52.0 |
| Zm00001d047039_P001 | Maize | cytosol, nucleus, plastid, vacuole | 53.03 | 51.62 |
| VIT_08s0007g08820.t01 | Wine grape | extracellular | 6.85 | 44.87 |
| TraesCS3B01G558700.1 | Wheat | cytosol, plastid | 39.53 | 42.35 |
| TraesCS3D01G503800.1 | Wheat | plastid | 37.18 | 42.04 |
| TraesCS3B01G558900.1 | Wheat | cytosol, plastid | 38.94 | 41.72 |
| TraesCS3A01G496100.1 | Wheat | cytosol, plastid | 38.55 | 41.3 |
| OQU88218 | Sorghum | plastid | 35.62 | 38.81 |
| Zm00001d011822_P001 | Maize | cytosol | 24.07 | 30.37 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400034496 | EnsemblPlantsGene:PGSC0003DMG400013259 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005737 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015031 | InterPro:NMD3 | ncoils:Coil |
| PANTHER:PTHR12746 | PFAM:PF04981 | PGSC:PGSC0003DMG400013259 | SEG:seg | UniParc:UPI0002966909 | UniProt:M1B0S8 |
| MapMan:17.1.2.2.2.5 | : | : | : | : | : |
Description
Nonsense-mediated mRNA decay protein [Source:PGSC_GENE;Acc:PGSC0003DMG400013259]
Coordinates
chr11:-:938850..941351
Molecular Weight (calculated)
58578.4 Da
IEP (calculated)
6.667
GRAVY (calculated)
-0.307
Length
511 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEVLGMFTV QQTIGNVLCC KCGISMQPNA ANMCAKCLRS EVDITEDLQK HVVIVHCPEC DGYLQPPRSW IKAQLESKEL LTFCIKKLKN LNKVKLVNAE
101: FIWTEPHSKR IKIRLKVQKE VLNGAVLEQS YIVEYVVQDQ MCDSCSKVQV NPDQWVAAVQ LRQHVSHRRT FFYLEQLIIK HDAANRAIKI QQLDQGIDFF
201: FGHRSHALKF VDFVCRVVLV RTRNAKQLAS HDHKSNIVNY KYTFSVEISP VCREDLICLP PKVAASLGNI GPLVICTKVS NSISLLDPFT LRHCFLDADQ
301: YWRASFKPLL SSRQLVEYVV LDVDVVSEEV NIGGSKYVLA DIQVARVSDF GKNDTIFSVR THLGHLLDAG DYALGYDLYR ANSNDFELEK YKGLVLPEVI
401: LIKKSYEEKH QKKRGKPRSW KLKSLNMEID NSGKGRDQEQ KMNSEYEHFL RDLEENPDMR FNISLYRDKE YQRSETTSVA DGEDVPSIPL EELLADIDLN
501: DIDVEEDGIR E
101: FIWTEPHSKR IKIRLKVQKE VLNGAVLEQS YIVEYVVQDQ MCDSCSKVQV NPDQWVAAVQ LRQHVSHRRT FFYLEQLIIK HDAANRAIKI QQLDQGIDFF
201: FGHRSHALKF VDFVCRVVLV RTRNAKQLAS HDHKSNIVNY KYTFSVEISP VCREDLICLP PKVAASLGNI GPLVICTKVS NSISLLDPFT LRHCFLDADQ
301: YWRASFKPLL SSRQLVEYVV LDVDVVSEEV NIGGSKYVLA DIQVARVSDF GKNDTIFSVR THLGHLLDAG DYALGYDLYR ANSNDFELEK YKGLVLPEVI
401: LIKKSYEEKH QKKRGKPRSW KLKSLNMEID NSGKGRDQEQ KMNSEYEHFL RDLEENPDMR FNISLYRDKE YQRSETTSVA DGEDVPSIPL EELLADIDLN
501: DIDVEEDGIR E
001: MSVMDESGMF NVQQTIGSVL CCKCGVPMAP NAANMCVNCL RSEVDITEGL QKSIQIFYCP ECTCYLQPPK TWIKCQWESK ELLTFCIKRL KNLNKVKLKN
101: AEFVWTEPHS KRIKVKLTVQ AEVLNGAVLE QSYPVEYTVR DNLCESCSRF QANPDQWVAS IQLRQHVSHR RTFFYLEQLI LRHDAASRAI RIQQVDQGID
201: FFFGNKSHAN SFVEFLRKVV PIEYRQDQQL VSHDVKSSLY NYKYTYSVKI CPVCREDLVC LPSKVASGLG NLGPLVVCTK VSDNITLLDP RTLRCAFLDA
301: RQYWRSGFRS ALTSRQLVKY FVFDVEPPVG EATVGGQKYA LSYVQIARES DIGKMFYVQT HLGHILKPGD QALGYDIYGA NVNDNEMEKY RLSVKNGLPE
401: AILIKKCYEE QRERKQKKSR NWKLKSLPME MDDSRGRVDP EKTDKEYEEF LRDLEENPEL RFNISLYRDK DYQASETASM TDGEGAPSVP IEELLADLDL
501: SFEEEDDDDE DDMAAE
101: AEFVWTEPHS KRIKVKLTVQ AEVLNGAVLE QSYPVEYTVR DNLCESCSRF QANPDQWVAS IQLRQHVSHR RTFFYLEQLI LRHDAASRAI RIQQVDQGID
201: FFFGNKSHAN SFVEFLRKVV PIEYRQDQQL VSHDVKSSLY NYKYTYSVKI CPVCREDLVC LPSKVASGLG NLGPLVVCTK VSDNITLLDP RTLRCAFLDA
301: RQYWRSGFRS ALTSRQLVKY FVFDVEPPVG EATVGGQKYA LSYVQIARES DIGKMFYVQT HLGHILKPGD QALGYDIYGA NVNDNEMEKY RLSVKNGLPE
401: AILIKKCYEE QRERKQKKSR NWKLKSLPME MDDSRGRVDP EKTDKEYEEF LRDLEENPEL RFNISLYRDK DYQASETASM TDGEGAPSVP IEELLADLDL
501: SFEEEDDDDE DDMAAE
Arabidopsis Description
Nonsense-mediated mRNA decay NMD3 family protein [Source:UniProtKB/TrEMBL;Acc:Q9SI58]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.