Factsheet for VIT_04s0043g00250.t01

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 2
golgi 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400041978	Potato	cytosol	68.4	82.19
Solyc06g053800.1.1	Tomato	cytosol	67.26	81.78
PGSC0003DMT400034496	Potato	cytosol	63.03	75.73
Solyc11g011780.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	61.89	75.7
VIT_08s0007g08810.t01	Wine grape	cytosol	62.22	73.32
GSMUA_Achr3P21620_001	Banana	cytosol	21.17	67.01
TraesCS1D01G195700.1	Wheat	unclear	46.74	55.09
TraesCS1A01G192300.1	Wheat	plastid	46.74	55.09
TraesCS1B01G207100.1	Wheat	plastid	46.25	54.83
EER91888	Sorghum	plastid	46.58	54.48
Zm00001d030040_P001	Maize	extracellular	46.25	54.1
VIT_08s0007g08820.t01	Wine grape	extracellular	6.84	53.85
Os10t0573900-01	Rice	nucleus	45.28	53.15
Zm00001d047039_P001	Maize	cytosol, nucleus, plastid, vacuole	45.28	52.95
TraesCS3B01G558700.1	Wheat	cytosol, plastid	33.22	42.77
TraesCS3B01G558900.1	Wheat	cytosol, plastid	33.22	42.77
TraesCS3D01G503800.1	Wheat	plastid	31.43	42.7
TraesCS3A01G496100.1	Wheat	cytosol, plastid	32.74	42.14
VIT_08s0007g08500.t01	Wine grape	cytosol	24.76	40.86
OQU88218	Sorghum	plastid	29.48	38.59
Zm00001d011822_P001	Maize	cytosol	20.85	31.6

Protein Annotations

EntrezGene:100245020	wikigene:100245020	MapMan:17.1.2.2.2.5	ProteinID:CCB51850	ProteinID:CCB51850.1	UniProt:F6HI03
EMBL:FN595763	GO:GO:0000055	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006810	GO:GO:0008150	GO:GO:0015031
GO:GO:0043023	EntrezGene:LOC100245020	wikigene:LOC100245020	InterPro:NMD3	PFAM:PF04981	PANTHER:PTHR12746
UniParc:UPI0002108DBC	ArrayExpress:VIT_04s0043g00250	EnsemblPlantsGene:VIT_04s0043g00250	EnsemblPlants:VIT_04s0043g00250.t01	RefSeq:XP_002265288	RefSeq:XP_002265288.1
SEG:seg	:	:	:	:	:

Description

60S ribosomal export protein NMD3 [Source:UniProtKB/TrEMBL;Acc:F6HI03]

Coordinates

chr4:-:13329059..13333387

Molecular Weight (calculated)

71005.0 Da

IEP (calculated)

8.087

GRAVY (calculated)

-0.329

Length

614 amino acids

Sequence
(BLAST)

001: MIINKLILRF ICWKREERPK HERRPLQPPG LVGIYFAFGL FLRIEYSSIL KSKFLRPGKA MAEEAGMFMV HQTVGSVLCC KCGIPMTPNA ANMCVKCLRS
101: EIDITEGLQK HVTIVHCPEC DTYLQPPKTW IKAQLESKEL LTFCVKRLKN LNKVRLIHAE FIWTEPHSKR IKVKLRVQKE VLNGAILEQA YIVEFVQQEH
201: MCESCSRVQA NPDQWVASVQ LRQHVPHRRT FFYLEQLILR HDAAGRAIKI KQMDQGIDFF FANRSHGVKF VEFIGKVTPS RSRHDKQLVS HDTKSNNYNY
301: KYTFSVEICP ICREDLICLP PKVAVSLGNL GPLVICTKVS NNIALLDPFT LRHCFLDADQ YWRSSFKALL SSRQLVEYIV LDVEIVSSEV NVGGSKYALA
401: DAQVARVSDF GKNDTIFNIR THLGHLLNPG DHALGYDVYA ANSNDMELEK YRGFVLPEAI LIKKSYEEKR QRKRGKPRSW KLKSLNMEVD DSKGRADQEK
501: MNTEYEVFLR DLEEDPELRF NISLYRNKEY QPSEMASMTD GEDLPSVPLE ELLADLDLSE EEDGDNMWTC EGMCTRRWHW HMVQATSDLF QRWRHGSSMF
601: RVEITFLFGV LPPV

Best Arabidopsis Sequence Match ( AT2G03820.1 )
(BLAST)

001: MSVMDESGMF NVQQTIGSVL CCKCGVPMAP NAANMCVNCL RSEVDITEGL QKSIQIFYCP ECTCYLQPPK TWIKCQWESK ELLTFCIKRL KNLNKVKLKN
101: AEFVWTEPHS KRIKVKLTVQ AEVLNGAVLE QSYPVEYTVR DNLCESCSRF QANPDQWVAS IQLRQHVSHR RTFFYLEQLI LRHDAASRAI RIQQVDQGID
201: FFFGNKSHAN SFVEFLRKVV PIEYRQDQQL VSHDVKSSLY NYKYTYSVKI CPVCREDLVC LPSKVASGLG NLGPLVVCTK VSDNITLLDP RTLRCAFLDA
301: RQYWRSGFRS ALTSRQLVKY FVFDVEPPVG EATVGGQKYA LSYVQIARES DIGKMFYVQT HLGHILKPGD QALGYDIYGA NVNDNEMEKY RLSVKNGLPE
401: AILIKKCYEE QRERKQKKSR NWKLKSLPME MDDSRGRVDP EKTDKEYEEF LRDLEENPEL RFNISLYRDK DYQASETASM TDGEGAPSVP IEELLADLDL
501: SFEEEDDDDE DDMAAE

Arabidopsis Description

Nonsense-mediated mRNA decay NMD3 family protein [Source:UniProtKB/TrEMBL;Acc:Q9SI58]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.