Factsheet for VIT_08s0007g08820.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P21620_001	Banana	cytosol	35.9	14.43
VIT_08s0007g08500.t01	Wine grape	cytosol	43.59	9.14
KRH03172	Soybean	cytosol, endoplasmic reticulum	48.72	8.33
VIT_08s0007g08810.t01	Wine grape	cytosol	51.28	7.68
KRG97977	Soybean	cytosol	50.0	7.65
KRH30911	Soybean	cytosol	50.0	7.65
PGSC0003DMT400041978	Potato	cytosol	46.15	7.05
Solyc06g053800.1.1	Tomato	cytosol	44.87	6.93
PGSC0003DMT400034496	Potato	cytosol	44.87	6.85
VIT_04s0043g00250.t01	Wine grape	golgi	53.85	6.84
Solyc11g011780.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	43.59	6.77
Os10t0573900-01	Rice	nucleus	39.74	5.93
TraesCS1B01G207100.1	Wheat	plastid	37.18	5.6
TraesCS1D01G195700.1	Wheat	unclear	37.18	5.57
TraesCS1A01G192300.1	Wheat	plastid	37.18	5.57
EER91888	Sorghum	plastid	37.18	5.52
Zm00001d030040_P001	Maize	extracellular	37.18	5.52
Zm00001d047039_P001	Maize	cytosol, nucleus, plastid, vacuole	35.9	5.33
TraesCS3D01G503800.1	Wheat	plastid	28.21	4.87
TraesCS3B01G558700.1	Wheat	cytosol, plastid	28.21	4.61
TraesCS3A01G496100.1	Wheat	cytosol, plastid	26.92	4.4
TraesCS3B01G558900.1	Wheat	cytosol, plastid	26.92	4.4
OQU88218	Sorghum	plastid	19.23	3.2
Zm00001d011822_P001	Maize	cytosol	14.1	2.72

Protein Annotations

ArrayExpress:VIT_08s0007g08820	EMBL:FN595991	EnsemblPlants:VIT_08s0007g08820.t01	EnsemblPlantsGene:VIT_08s0007g08820	GO:GO:0000055	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0006810	GO:GO:0008150	GO:GO:0043023	PANTHER:PTHR12746	ProteinID:CBI29816	ProteinID:CBI29816.3
SEG:seg	SignalP:SignalP-noTM	UniParc:UPI0001BE38DC	UniProt:D7THU0	MapMan:35.2	:

Description

No Description!

Coordinates

chr8:-:22202178..22202414

Molecular Weight (calculated)

8359.5 Da

IEP (calculated)

8.226

GRAVY (calculated)

0.446

Length

78 amino acids

Sequence
(BLAST)

1: MILKLSYLPL ILALPLSAVA RESSMFRVHH QTIGRVPCCK CGIPTAPTAA NMCVNCLPSE VDIPEGLQKH ATLFGGNI

Best Arabidopsis Sequence Match ( AT2G03820.1 )
(BLAST)

001: MSVMDESGMF NVQQTIGSVL CCKCGVPMAP NAANMCVNCL RSEVDITEGL QKSIQIFYCP ECTCYLQPPK TWIKCQWESK ELLTFCIKRL KNLNKVKLKN
101: AEFVWTEPHS KRIKVKLTVQ AEVLNGAVLE QSYPVEYTVR DNLCESCSRF QANPDQWVAS IQLRQHVSHR RTFFYLEQLI LRHDAASRAI RIQQVDQGID
201: FFFGNKSHAN SFVEFLRKVV PIEYRQDQQL VSHDVKSSLY NYKYTYSVKI CPVCREDLVC LPSKVASGLG NLGPLVVCTK VSDNITLLDP RTLRCAFLDA
301: RQYWRSGFRS ALTSRQLVKY FVFDVEPPVG EATVGGQKYA LSYVQIARES DIGKMFYVQT HLGHILKPGD QALGYDIYGA NVNDNEMEKY RLSVKNGLPE
401: AILIKKCYEE QRERKQKKSR NWKLKSLPME MDDSRGRVDP EKTDKEYEEF LRDLEENPEL RFNISLYRDK DYQASETASM TDGEGAPSVP IEELLADLDL
501: SFEEEDDDDE DDMAAE

Arabidopsis Description

Nonsense-mediated mRNA decay NMD3 family protein [Source:UniProtKB/TrEMBL;Acc:Q9SI58]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.