Subcellular Localization
min:
: max
Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, mitochondrion, plastid, cytosol, plasma membrane, golgi
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
- mitochondrion 2
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra040033.1-P | Field mustard | cytosol | 94.5 | 94.5 |
| CDY39255 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 89.19 | 89.37 |
| CDY07477 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 89.0 | 89.17 |
| AT2G03820.1 | Thale cress | cytosol | 82.12 | 81.01 |
| Solyc06g053800.1.1 | Tomato | cytosol | 63.65 | 64.16 |
| KRH03172 | Soybean | cytosol, endoplasmic reticulum | 56.97 | 63.6 |
| PGSC0003DMT400041978 | Potato | cytosol | 63.46 | 63.21 |
| HORVU1Hr1G050300.1 | Barley | cytosol, mitochondrion | 6.68 | 62.96 |
| KRG97977 | Soybean | cytosol | 63.06 | 62.94 |
| KRH30911 | Soybean | cytosol | 62.67 | 62.55 |
| Solyc11g011780.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 61.49 | 62.35 |
| PGSC0003DMT400034496 | Potato | cytosol | 61.49 | 61.25 |
| GSMUA_Achr3P21620_001 | Banana | cytosol | 22.79 | 59.79 |
| TraesCS1D01G195700.1 | Wheat | unclear | 53.05 | 51.82 |
| TraesCS1A01G192300.1 | Wheat | plastid | 52.85 | 51.63 |
| TraesCS1B01G207100.1 | Wheat | plastid | 52.46 | 51.54 |
| EER91888 | Sorghum | plastid | 51.28 | 49.71 |
| Os10t0573900-01 | Rice | nucleus | 50.29 | 48.95 |
| Zm00001d030040_P001 | Maize | extracellular | 50.1 | 48.57 |
| Zm00001d047039_P001 | Maize | cytosol, nucleus, plastid, vacuole | 49.9 | 48.38 |
| TraesCS3B01G558700.1 | Wheat | cytosol, plastid | 38.31 | 40.88 |
| TraesCS3D01G503800.1 | Wheat | plastid | 36.15 | 40.71 |
| TraesCS3A01G496100.1 | Wheat | cytosol, plastid | 37.72 | 40.25 |
| TraesCS3B01G558900.1 | Wheat | cytosol, plastid | 37.13 | 39.62 |
| OQU88218 | Sorghum | plastid | 33.4 | 36.25 |
| VIT_08s0007g08500.t01 | Wine grape | cytosol | 25.74 | 35.22 |
| Zm00001d011822_P001 | Maize | cytosol | 23.58 | 29.63 |
Protein Annotations
| EnsemblPlants:CDY22138 | EnsemblPlantsGene:GSBRNA2T00018529001 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005737 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015031 | InterPro:NMD3 | PANTHER:PTHR12746 |
| PFAM:PF04981 | ProteinID:CDY22138 | ProteinID:CDY22138.1 | SEG:seg | UniParc:UPI0004EEDD6A | UniProt:A0A078GBS8 |
| MapMan:17.1.2.2.2.5 | : | : | : | : | : |
Description
BnaC01g39630DBnaC01g39630D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GBS8]
Coordinates
chrLK032128:-:77159..79032
Molecular Weight (calculated)
58288.8 Da
IEP (calculated)
6.579
GRAVY (calculated)
-0.443
Length
509 amino acids
Sequence
(BLAST)
(BLAST)
001: MFKVQQTIVS VLCCKCGVPM PPNAANMCVN CLRSEVDITE GLQKSVQIFY CPECGCYLQP PKTWIKAQWE SKELLSFCIK RLKNLNKVRL TNAEFVWTEP
101: HSKRIKLKLT VQAEVLNGAG LEQSYLVEYT VRDHLCESCS RFQANPDQWV ASVQLRQHVS HRRSFFYLEQ LILRNDAASR AVRIKQVHQG VDFFFGNKSH
201: ADNFVEFLSK VVPIESRQDK QLVSHDVKSS LYNYKYTYSV KICPICREDL IFLPSKVASG LGSLGPLVVC TKVSERITLL DPRTLRCAFL DARQYWRSGF
301: RSALTSRQLV KYSVVYVEPP VGEATVGGQK YALSYVHIAR ESDIGKMLTV QRLQTHLGHI LKTGDQALGY DIYGANVSDD EMDEYRLHGG IPEVILIKKC
401: YDKERERKKG KPRAFTTKKL PMEMDESRGG RGVDPKKMEN EYEEFLRDLE ENPELRFNIS LYKNKDYQES DETASMTDGE GAPTVPIEEL LAELELSEEE
501: GDDEEYMDE
101: HSKRIKLKLT VQAEVLNGAG LEQSYLVEYT VRDHLCESCS RFQANPDQWV ASVQLRQHVS HRRSFFYLEQ LILRNDAASR AVRIKQVHQG VDFFFGNKSH
201: ADNFVEFLSK VVPIESRQDK QLVSHDVKSS LYNYKYTYSV KICPICREDL IFLPSKVASG LGSLGPLVVC TKVSERITLL DPRTLRCAFL DARQYWRSGF
301: RSALTSRQLV KYSVVYVEPP VGEATVGGQK YALSYVHIAR ESDIGKMLTV QRLQTHLGHI LKTGDQALGY DIYGANVSDD EMDEYRLHGG IPEVILIKKC
401: YDKERERKKG KPRAFTTKKL PMEMDESRGG RGVDPKKMEN EYEEFLRDLE ENPELRFNIS LYKNKDYQES DETASMTDGE GAPTVPIEEL LAELELSEEE
501: GDDEEYMDE
001: MSVMDESGMF NVQQTIGSVL CCKCGVPMAP NAANMCVNCL RSEVDITEGL QKSIQIFYCP ECTCYLQPPK TWIKCQWESK ELLTFCIKRL KNLNKVKLKN
101: AEFVWTEPHS KRIKVKLTVQ AEVLNGAVLE QSYPVEYTVR DNLCESCSRF QANPDQWVAS IQLRQHVSHR RTFFYLEQLI LRHDAASRAI RIQQVDQGID
201: FFFGNKSHAN SFVEFLRKVV PIEYRQDQQL VSHDVKSSLY NYKYTYSVKI CPVCREDLVC LPSKVASGLG NLGPLVVCTK VSDNITLLDP RTLRCAFLDA
301: RQYWRSGFRS ALTSRQLVKY FVFDVEPPVG EATVGGQKYA LSYVQIARES DIGKMFYVQT HLGHILKPGD QALGYDIYGA NVNDNEMEKY RLSVKNGLPE
401: AILIKKCYEE QRERKQKKSR NWKLKSLPME MDDSRGRVDP EKTDKEYEEF LRDLEENPEL RFNISLYRDK DYQASETASM TDGEGAPSVP IEELLADLDL
501: SFEEEDDDDE DDMAAE
101: AEFVWTEPHS KRIKVKLTVQ AEVLNGAVLE QSYPVEYTVR DNLCESCSRF QANPDQWVAS IQLRQHVSHR RTFFYLEQLI LRHDAASRAI RIQQVDQGID
201: FFFGNKSHAN SFVEFLRKVV PIEYRQDQQL VSHDVKSSLY NYKYTYSVKI CPVCREDLVC LPSKVASGLG NLGPLVVCTK VSDNITLLDP RTLRCAFLDA
301: RQYWRSGFRS ALTSRQLVKY FVFDVEPPVG EATVGGQKYA LSYVQIARES DIGKMFYVQT HLGHILKPGD QALGYDIYGA NVNDNEMEKY RLSVKNGLPE
401: AILIKKCYEE QRERKQKKSR NWKLKSLPME MDDSRGRVDP EKTDKEYEEF LRDLEENPEL RFNISLYRDK DYQASETASM TDGEGAPSVP IEELLADLDL
501: SFEEEDDDDE DDMAAE
Arabidopsis Description
Nonsense-mediated mRNA decay NMD3 family protein [Source:UniProtKB/TrEMBL;Acc:Q9SI58]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.