Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d044917_P001 | Maize | nucleus | 93.03 | 92.28 |
| Os06t0215200-01 | Rice | nucleus | 81.97 | 82.3 |
| TraesCS7D01G174600.1 | Wheat | nucleus | 81.97 | 81.97 |
| TraesCS7B01G078500.1 | Wheat | nucleus | 81.56 | 81.56 |
| TraesCS7A01G173200.1 | Wheat | nucleus | 80.74 | 80.74 |
| HORVU7Hr1G035910.4 | Barley | nucleus | 81.56 | 75.38 |
| GSMUA_Achr10P... | Banana | nucleus | 52.46 | 66.67 |
| KRH76336 | Soybean | nucleus | 58.2 | 57.49 |
| KRH33288 | Soybean | nucleus | 58.2 | 57.49 |
| KRH71626 | Soybean | nucleus | 57.38 | 56.91 |
| AT1G49590.1 | Thale cress | nucleus | 54.92 | 55.37 |
| VIT_03s0063g00890.t01 | Wine grape | nucleus | 58.2 | 55.25 |
| CDY50960 | Canola | nucleus | 51.64 | 51.43 |
| CDY28102 | Canola | nucleus | 51.64 | 51.43 |
| Bra018814.1-P | Field mustard | nucleus | 51.64 | 51.22 |
| PGSC0003DMT400066376 | Potato | nucleus | 54.92 | 51.15 |
| Solyc01g108430.2.1 | Tomato | nucleus | 54.51 | 50.76 |
Protein Annotations
| Gene3D:3.30.160.60 | MapMan:35.1 | EntrezGene:8070770 | UniProt:C5Z6J0 | ncoils:Coil | EnsemblPlants:EER89414 |
| ProteinID:EER89414 | ProteinID:EER89414.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003690 |
| GO:GO:0003723 | GO:GO:0003725 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005654 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008270 | GO:GO:0008380 | GO:GO:0009791 | GO:GO:0009845 | GO:GO:0009987 |
| GO:GO:0015030 | GO:GO:0046872 | GO:GO:0080188 | InterPro:IPR000690 | InterPro:Matrin/U1-C_Znf_C2H2 | InterPro:Matrin/U1-like-C_Znf_C2H2 |
| PFAM:PF06220 | PFscan:PS50171 | PANTHER:PTHR13173 | PANTHER:PTHR13173:SF10 | SMART:SM00451 | EnsemblPlantsGene:SORBI_3010G083700 |
| SUPFAM:SSF57667 | unigene:Sbi.194 | InterPro:U1-CZ_Znf_C2H2 | UniParc:UPI0001A89833 | RefSeq:XP_002438047.1 | InterPro:Znf_C2H2_sf |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr10:-:7138579..7147096
Molecular Weight (calculated)
27295.0 Da
IEP (calculated)
9.915
GRAVY (calculated)
-0.990
Length
244 amino acids
Sequence
(BLAST)
(BLAST)
001: MTEYWVSQGN KWCDFCKIYI ANNSFSIRTH ELGKRHKDNV TKRLSTMQKE SEAKEKEQQQ AARALQQIEA KAKKSYQKDL ENNQRNVDGD TSAPGDGWVF
101: DSASGYYHDK STGLYYDSNS GFYYSDSLGK WVTQEEAYKS VQISKTDIGQ SSTSQTKAPA AETAVPAIKG GPAPGRVVTK PLNPMRPIKG TPAPSAVAVN
201: KRKREDGKPK VISKEEEAAL KAREAARKRV EDREKPLMGL YKTY
101: DSASGYYHDK STGLYYDSNS GFYYSDSLGK WVTQEEAYKS VQISKTDIGQ SSTSQTKAPA AETAVPAIKG GPAPGRVVTK PLNPMRPIKG TPAPSAVAVN
201: KRKREDGKPK VISKEEEAAL KAREAARKRV EDREKPLMGL YKTY
001: MTEYWVSQGN KWCEFCKIWI QNNPTSIRNH DLGKRHRECV DKKLTDMRER SAAKDKELKK NEKLLQQIEA KATRSYQKDI ATAQQVAKAN GAPEDGTSDW
101: MLDSASGYYY NQTNGLHYDS QSGFYYSDSI GHWVTQDEAY AAVKTSSGTK VPLVKKPVSS SGAGPSVGKP PGRLVTASLN PKRAVKGAAS SVDLGNNKRK
201: RQDEKPKKVS AEEKAALKAR EAARKRVEDR EKPLLGLYNR PF
101: MLDSASGYYY NQTNGLHYDS QSGFYYSDSI GHWVTQDEAY AAVKTSSGTK VPLVKKPVSS SGAGPSVGKP PGRLVTASLN PKRAVKGAAS SVDLGNNKRK
201: RQDEKPKKVS AEEKAALKAR EAARKRVEDR EKPLLGLYNR PF
Arabidopsis Description
ZOP1Zinc finger protein ZOP1 [Source:UniProtKB/Swiss-Prot;Acc:Q7XA66]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.