Factsheet for VIT_03s0063g00890.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0317g00100.t01
VIT_01s0011g02040.t01
VIT_01s0026g00230.t01
VIT_01s0150g00590.t01
VIT_03s0017g00210.t01
VIT_03s0038g04360.t01
VIT_04s0023g01580.t01
VIT_05s0102g00480.t01
VIT_06s0080g00550.t01
VIT_08s0007g08500.t01
VIT_08s0040g00270.t01
VIT_11s0037g00510.t01
VIT_14s0108g00750.t01
VIT_15s0107g00220.t01
VIT_15s0107g00230.t01
VIT_16s0039g01140.t01
VIT_16s0098g00320.t01
VIT_16s0115g00130.t01
VIT_17s0000g03310.t01
VIT_18s0041g01230.t01
VIT_19s0027g01340.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G49590.1	VIT_01s0150g00590.t01	AT1G09760.1	23524848
AT1G49590.1	VIT_01s0011g02040.t01	AT1G14650.1	23524848
AT1G49590.1	VIT_11s0037g00510.t01	AT1G16030.1	23524848
AT1G49590.1	VIT_05s0102g00480.t01	AT1G20960.1	23524848
AT1G49590.1	VIT_01s0026g00230.t01	AT1G60170.1	23524848
AT1G49590.1	VIT_03s0038g04360.t01	AT1G71230.1	21798944
AT1G49590.1	VIT_08s0007g08500.t01	AT2G03820.1	23524848
AT1G49590.1	VIT_05s0102g00480.t01	AT2G42270.1	23524848
AT1G49590.1	VIT_03s0017g00210.t01	AT3G08530.1	21798944
AT1G49590.1	VIT_16s0115g00130.t01	AT3G08530.1	21798944
AT1G49590.1	VIT_19s0027g01340.t01	AT3G08530.1	21798944
AT1G49590.1	VIT_06s0080g00550.t01	AT3G19760.1	23524848
AT1G49590.1	VIT_04s0023g01580.t01	AT3G50670.1	23524848
AT1G49590.1	VIT_00s0317g00100.t01	AT3G55200.1	23524848
AT1G49590.1	VIT_15s0107g00220.t01	AT3G55200.1	23524848
AT1G49590.1	VIT_15s0107g00230.t01	AT3G55200.1	23524848
AT1G49590.1	VIT_00s0317g00100.t01	AT3G55220.1	23524848
AT1G49590.1	VIT_15s0107g00220.t01	AT3G55220.1	23524848
AT1G49590.1	VIT_15s0107g00230.t01	AT3G55220.1	23524848
AT1G49590.1	VIT_16s0039g01140.t01	AT3G56150.1	23524848
AT1G49590.1	VIT_16s0098g00320.t01	AT5G06160.1	23524848
AT1G49590.1	VIT_14s0108g00750.t01	AT5G39760.1	21798944
AT1G49590.1	VIT_17s0000g03310.t01	AT5G49910.1	23524848
AT1G49590.1	VIT_18s0041g01230.t01	AT5G49910.1	23524848
AT1G49590.1	VIT_08s0040g00270.t01	AT5G64270.1	23524848

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	nucleus	48.64	65.1
KRH33288	Soybean	nucleus	61.87	64.37
KRH76336	Soybean	nucleus	61.87	64.37
KRH71626	Soybean	nucleus	61.09	63.82
PGSC0003DMT400066376	Potato	nucleus	64.2	62.98
Solyc01g108430.2.1	Tomato	nucleus	63.42	62.21
AT1G49590.1	Thale cress	nucleus	57.2	60.74
Os06t0215200-01	Rice	nucleus	56.81	60.08
EER89414	Sorghum	nucleus	55.25	58.2
Bra018814.1-P	Field mustard	nucleus	55.64	58.13
CDY50960	Canola	nucleus	55.25	57.96
CDY28102	Canola	nucleus	55.25	57.96
Zm00001d044917_P001	Maize	nucleus	55.25	57.72
TraesCS7A01G173200.1	Wheat	nucleus	53.7	56.56
TraesCS7D01G174600.1	Wheat	nucleus	53.7	56.56
TraesCS7B01G078500.1	Wheat	nucleus	53.31	56.15
HORVU7Hr1G035910.4	Barley	nucleus	53.7	52.27

Protein Annotations

EntrezGene:100246948	wikigene:100246948	Gene3D:3.30.160.60	MapMan:35.1	UniProt:A5BH41	EMBL:AM459353
ProteinID:CAN63484	ProteinID:CAN63484.1	ProteinID:CBI32448	ProteinID:CBI32448.3	ncoils:Coil	EMBL:FN596006
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003690	GO:GO:0003723	GO:GO:0003725
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0006139	GO:GO:0006259	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0008380	GO:GO:0009791	GO:GO:0009845	GO:GO:0009987	GO:GO:0015030	GO:GO:0046872
GO:GO:0080188	InterPro:IPR000690	EntrezGene:LOC100246948	wikigene:LOC100246948	InterPro:Matrin/U1-C_Znf_C2H2	InterPro:Matrin/U1-like-C_Znf_C2H2
PFAM:PF06220	PFscan:PS50171	PANTHER:PTHR13173	SMART:SM00451	SUPFAM:SSF57667	TIGR:TC52329
InterPro:U1-CZ_Znf_C2H2	UniParc:UPI0001520CC9	ArrayExpress:VIT_03s0063g00890	EnsemblPlantsGene:VIT_03s0063g00890	EnsemblPlants:VIT_03s0063g00890.t01	unigene:Vvi.14503
RefSeq:XP_002285013	RefSeq:XP_002285013.1	RefSeq:XP_003631615	RefSeq:XP_003631615.1	RefSeq:XP_019074640.1	RefSeq:XP_019074641.1
InterPro:Znf_C2H2_sf	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3:-:4333663..4339807

Molecular Weight (calculated)

28690.0 Da

IEP (calculated)

9.711

GRAVY (calculated)

-1.102

Length

257 amino acids

Sequence
(BLAST)

001: MTEYWVSQGN KWCDFCKIYI ANNPSSIRNH ELGQRHKDSV AKRLASMRKE NAAKEKEQKE AAHALEQIES KAKRSYQKDI ATFREARESN ANALAQEDDS
101: STANDWEHDS ASGYYYSRSN GIYYDPNSGF YYSDAIGKWV TQEEAFATSQ ASSDSKQKGP VLKSPFSVSE GTQDRENKSA AKHQNGPPPG PVVSASLNPR
201: RSSKCAPSSV AINKRKRQDE KPKAVSKEEA AALKAREAAK KRVEEREKSL LGLYGSR

Best Arabidopsis Sequence Match ( AT1G49590.1 )
(BLAST)

001: MTEYWVSQGN KWCEFCKIWI QNNPTSIRNH DLGKRHRECV DKKLTDMRER SAAKDKELKK NEKLLQQIEA KATRSYQKDI ATAQQVAKAN GAPEDGTSDW
101: MLDSASGYYY NQTNGLHYDS QSGFYYSDSI GHWVTQDEAY AAVKTSSGTK VPLVKKPVSS SGAGPSVGKP PGRLVTASLN PKRAVKGAAS SVDLGNNKRK
201: RQDEKPKKVS AEEKAALKAR EAARKRVEDR EKPLLGLYNR PF

Arabidopsis Description

ZOP1Zinc finger protein ZOP1 [Source:UniProtKB/Swiss-Prot;Acc:Q7XA66]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.