Factsheet for VIT_04s0023g01580.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0026g00250.t01
VIT_07s0005g00320.t01
VIT_08s0040g02860.t01
VIT_10s0042g00400.t01
VIT_14s0060g02290.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50670.1	VIT_07s0005g00320.t01	AT1G02840.1	18674533
AT3G50670.1	VIT_14s0060g02290.t01	AT1G09140.1	21798944
AT3G50670.1	VIT_01s0026g00250.t01	AT1G23860.1	10593939
AT3G50670.1	VIT_01s0026g00250.t01	AT1G23860.1	9761791
AT3G50670.1	VIT_08s0040g02860.t01	AT2G37340.1	18674533
AT3G50670.1	VIT_10s0042g00400.t01	AT4G31580.1	10593939
AT3G50670.1	VIT_10s0042g00400.t01	AT4G31580.1	9761791

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	nucleus	76.69	70.0
Bra012098.1-P	Field mustard	cytosol	33.43	66.85
CDY53849	Canola	nucleus, plastid	38.2	66.67
TraesCS1B01G146600.1	Wheat	nucleus	66.29	65.92
GSMUA_Achr7P08090_001	Banana	nucleus	74.16	63.77
GSMUA_Achr7P00820_001	Banana	cytosol	16.85	61.86
CDX81371	Canola	nucleus	69.94	59.14
CDY57127	Canola	plasma membrane	69.94	59.0
KRH28659	Soybean	nucleus	79.49	58.71
KRH76798	Soybean	nucleus	78.65	58.21
AT3G50670.1	Thale cress	nucleus	69.38	57.85
PGSC0003DMT400038558	Potato	nucleus	71.07	53.26
Solyc02g085420.2.1	Tomato	nucleus	71.35	53.14
Os10t0115600-02	Rice	nucleus	68.82	52.92
TraesCS1D01G162500.1	Wheat	nucleus	69.66	51.56
HORVU1Hr1G046870.5	Barley	nucleus	69.38	51.35
TraesCS1A01G176500.1	Wheat	nucleus	69.38	51.35
TraesCS1B01G203600.1	Wheat	nucleus	68.82	50.94
EER95096	Sorghum	nucleus	67.98	50.0
TraesCS1D01G124800.1	Wheat	nucleus	66.01	49.06
EER91800	Sorghum	nucleus	66.01	48.35
TraesCS1A01G128600.1	Wheat	nucleus	65.17	48.23
HORVU1Hr1G030660.5	Barley	nucleus	64.04	45.78
Zm00001d014343_P002	Maize	nucleus	68.82	43.59
CDY30756	Canola	nucleus, plastid	50.56	43.37
KRH69931	Soybean	cytosol, mitochondrion, nucleus	22.75	41.54
VIT_05s0102g00080.t01	Wine grape	nucleus	23.03	24.12

Protein Annotations

EntrezGene:100244445	wikigene:100244445	MapMan:16.4.1.1.1	Gene3D:3.30.70.330	ProteinID:CCB44460	ProteinID:CCB44460.1
UniProt:F6GWX4	EMBL:FN594959	GO:GO:0000243	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005685	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0030619	GO:GO:0071004	GO:GO:0071011	InterPro:IPR000504	InterPro:IPR012677	EntrezGene:LOC100244445
wikigene:LOC100244445	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF12220	PFscan:PS50102	PANTHER:PTHR13952
PANTHER:PTHR13952:SF5	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	InterPro:U1snRNP70_N
UniParc:UPI0002109A24	ArrayExpress:VIT_04s0023g01580	EnsemblPlantsGene:VIT_04s0023g01580	EnsemblPlants:VIT_04s0023g01580.t01	RefSeq:XP_002270129	RefSeq:XP_002270129.1
SEG:seg	InterPro:snRNP70_RRM	:	:	:	:

Description

No Description!

Coordinates

chr4:+:18116496..18126475

Molecular Weight (calculated)

41989.9 Da

IEP (calculated)

10.610

GRAVY (calculated)

-1.693

Length

356 amino acids

Sequence
(BLAST)

001: MGDYNDALMR NNNAAVQART KAQNRANVLQ LKLIGQSHPT GLTANLLKLF EPRPPLEFKP PPEKRKCPPY TGMAQFASNF AEPGEPEYSP PVQKAETPAQ
101: RRARIHKLRL EKGAEKATEE FQKYDPNNDP NISGDPYKTL FVARLNYETT ESRIKREFEA YGPIKRVRLI TDKETSKPRG YAFIEYMHTR DMKAAYKQAD
201: GRKLDNRRVL VDVERGRTVP NWRPRRLGGG LGTTRVGGEE VNPKYSGREQ QPVGGPPRSE EPRTREDRHG DRDREKSRER GRDREREREK SREPDRARDR
301: DHREDRHHRD RDRNRDKDRD RDRGRDRDRT RDRDRGRDRG RDYERERDRD RDQGER

Best Arabidopsis Sequence Match ( AT3G50670.1 )
(BLAST)

001: MGDSGDPFLR NPNAAVQARA KVQNRANVLQ LKLMGQSHPT GLTNNLLKLF EPRPPLEYKP PPEKRKCPPY TGMAQFVSNF AEPGDPEYAP PKPEVELPSQ
101: KRERIHKLRL EKGVEKAAED LKKYDPNNDP NATGDPYKTL FVSRLNYESS ESKIKREFES YGPIKRVHLV TDQLTNKPKG YAFIEYMHTR DMKAAYKQAD
201: GQKIDGRRVL VDVERGRTVP NWRPRRLGGG LGTSRVGGGE EIVGEQQPQG RTSQSEEPSR PREEREKSRE KGKERERSRE LSHEQPRERS RDRPREDKHH
301: RDRDQGGRDR DRDSRRDRDR TRDRGDRDRR DRDRGRDRTS RDHDRDRSRK KERDYEGGEY EHEGGGRSRE RDAEYRGEPE ETRGYYEDDQ GDTDRYSHRY
401: DKMEEDDFRY EREYKRSKRS ESREYVR

Arabidopsis Description

RNU1U1SNRNP [Source:UniProtKB/TrEMBL;Acc:A0A178VDW4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.