Factsheet for VIT_14s0060g02290.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0004g05220.t01
VIT_13s0019g01060.t01
VIT_13s0019g05080.t01
VIT_14s0030g00480.t01
VIT_19s0027g01660.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09140.1	VIT_19s0027g01660.t01	AT1G53720.1	16497658
AT1G09140.1	VIT_06s0004g05220.t01	AT2G29210.1	21798944
AT1G09140.1	VIT_13s0019g01060.t01	AT3G55460.1	18674533
AT1G09140.1	VIT_13s0019g05080.t01	AT5G04280.1	21798944
AT1G09140.1	VIT_14s0030g00480.t01	AT5G18810.1	18674533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra018581.1-P	Field mustard	cytosol	62.15	77.16
KXG32406	Sorghum	cytosol	66.67	74.13
TraesCS3B01G293100.1	Wheat	cytosol	64.93	73.33
CDY66028	Canola	cytosol	64.24	73.12
TraesCS3D01G260200.1	Wheat	cytosol	64.58	72.94
Solyc01g099810.2.1	Tomato	nucleus	66.32	72.35
TraesCS3A01G260000.1	Wheat	cytosol	63.89	72.16
TraesCS1A01G229900.1	Wheat	cytosol, mitochondrion, nucleus	61.46	69.96
AT1G09140.1	Thale cress	cytosol	64.58	69.4
TraesCS1D01G232100.2	Wheat	cytosol, mitochondrion, nucleus	61.11	69.29
KRG92904	Soybean	nucleus	66.32	69.2
TraesCS1B01G244200.1	Wheat	cytosol, mitochondrion, nucleus	63.89	68.4
KXG21829	Sorghum	nucleus	65.28	67.63
VIT_16s0098g01020.t01	Wine grape	nucleus	58.68	67.6
Os03t0344100-02	Rice	mitochondrion, nucleus	66.67	67.13
EER94870	Sorghum	mitochondrion, nucleus	66.67	67.13
HORVU2Hr1G019410.4	Barley	mitochondrion, nucleus	66.67	67.13
Zm00001d047498_P003	Maize	nucleus	66.32	67.02
TraesCS2A01G111600.2	Wheat	mitochondrion, nucleus	65.97	66.9
TraesCS2D01G112200.1	Wheat	nucleus	65.97	66.9
Os07t0673500-01	Rice	nucleus	68.06	66.22
Zm00001d040672_P013	Maize	nucleus	65.97	64.85
TraesCS4B01G157000.1	Wheat	mitochondrion, nucleus	65.62	64.51
TraesCS4D01G168700.1	Wheat	mitochondrion, nucleus	65.62	64.51
HORVU4Hr1G046940.7	Barley	mitochondrion, nucleus	64.93	63.39
VIT_07s0005g00320.t01	Wine grape	nucleus	67.36	62.99
TraesCS4A01G157700.1	Wheat	mitochondrion	64.58	62.84
Os05t0364600-01	Rice	nucleus	69.44	62.7
Zm00001d041673_P001	Maize	cytosol	23.96	60.53
GSMUA_Achr11P...	Banana	nucleus	71.53	59.54
GSMUA_Achr8P10150_001	Banana	nucleus	71.53	58.86
HORVU3Hr1G064550.7	Barley	nucleus, peroxisome	64.93	55.65
CDX95008	Canola	nucleus	61.11	55.52
TraesCS2B01G130400.1	Wheat	nucleus	65.97	54.91
Zm00001d037925_P006	Maize	cytosol, nucleus, plastid	61.11	50.87
PGSC0003DMT400063701	Potato	nucleus	57.29	50.0
Os01t0316600-01	Rice	plastid	15.62	36.29
Zm00001d009821_P001	Maize	plastid	31.6	28.62
VIT_08s0040g02860.t01	Wine grape	nucleus	26.04	28.2
VIT_13s0067g03600.t01	Wine grape	nucleus	31.6	27.08
VIT_08s0040g02850.t01	Wine grape	cytosol, extracellular, mitochondrion, nucleus	5.21	25.0

Protein Annotations

EntrezGene:100249315	wikigene:100249315	MapMan:16.4.6.1	Gene3D:3.30.70.330	ProteinID:CCB61856	ProteinID:CCB61856.1
UniProt:F6I4L9	EMBL:FN596746	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	EntrezGene:LOC100249315	wikigene:LOC100249315	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFscan:PS50102	PANTHER:PTHR43933	PANTHER:PTHR43933:SF1	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SUPFAM:SSF54928	TIGR:TC62779	UniParc:UPI00019849D4	ArrayExpress:VIT_14s0060g02290	EnsemblPlantsGene:VIT_14s0060g02290	EnsemblPlants:VIT_14s0060g02290.t01
unigene:Vvi.12989	RefSeq:XP_002283865	RefSeq:XP_002283865.1	RefSeq:XP_010659635.1	SEG:seg	:

Description

No Description!

Coordinates

chr14:-:1855910..1869748

Molecular Weight (calculated)

32842.0 Da

IEP (calculated)

10.937

GRAVY (calculated)

-1.025

Length

288 amino acids

Sequence
(BLAST)

001: MSSRSSRTVY VGNLPGDIRE REVEDLFYKY GPIVDIDLKI PPRPPGYAFV EFEDARDAED AIYGRDGYNF DGHRLRVELA HGGRGQSSSV DHYSSYSSSS
101: RGGLSRHSEY RVLVTGLPYS ASWQDLKDHM RRAGDVCFSQ VFRGRGGMTG IVDYTNYDDM KYAIRKLDDS LFKNQFSRAY IRVREYEPRS FSRSPSRSPS
201: VSRSRSPRRS RSYSYSNHSS GRSLSRSVSS QARSRSVSRS RSPLISPRRH KRVSRSPKKY RSPSRSLSGS RSPSRSSYRS RSADSRSD

Best Arabidopsis Sequence Match ( AT1G09140.3 )
(BLAST)

001: MSSRWNRTIY VGNLPGDIRK CEVEDLFYKY GPIVDIDLKI PPRPPGYAFV EFEDPRDADD AIYGRDGYDF DGCRLRVEIA HGGRRFSPSV DRYSSSYSAS
101: RAPSRRSDYR VLVTGLPPSA SWQDLKDHMR KAGDVCFSEV FPDRKGMSGV VDYSNYDDMK YAIRKLDATE FRNAFSSAYI RVREYESRSV SRSPDDSKSY
201: RSRSRSRGPS CSYSSKSRSV SPARSISPRS RPLSRSRSLY SSVSRYEC

Arabidopsis Description

SR30Serine/arginine-rich splicing factor SR30 [Source:UniProtKB/Swiss-Prot;Acc:Q9XFR5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.