Factsheet for VIT_16s0098g01020.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX94214	Canola	cytosol	64.8	81.0
KRH53616	Soybean	nucleus	81.6	77.57
KRH64312	Soybean	nucleus	82.4	77.15
CDX86974	Canola	nucleus	77.2	71.75
GSMUA_Achr1P06160_001	Banana	nucleus	71.2	71.49
Solyc03g082380.2.1	Tomato	nucleus	80.0	71.43
CDY00202	Canola	nucleus	78.0	70.91
Bra019595.1-P	Field mustard	nucleus	78.8	69.12
Bra017986.1-P	Field mustard	nucleus	77.2	67.96
CDY08133	Canola	cytosol	77.2	66.78
CDY05936	Canola	nucleus	78.0	66.1
CDX68538	Canola	nucleus	74.4	65.96
AT3G49430.4	Thale cress	nucleus	78.4	65.33
Bra029955.1-P	Field mustard	nucleus	67.6	65.0
VIT_14s0060g02290.t01	Wine grape	nucleus	67.6	58.68
PGSC0003DMT400008347	Potato	cytosol	73.2	57.01
VIT_07s0005g00320.t01	Wine grape	nucleus	66.4	53.9
CDY61855	Canola	nucleus	74.8	31.64
VIT_13s0067g03600.t01	Wine grape	nucleus	34.0	25.3
VIT_08s0040g02850.t01	Wine grape	cytosol, extracellular, mitochondrion, nucleus	6.0	25.0
VIT_08s0040g02860.t01	Wine grape	nucleus	25.6	24.06

Protein Annotations

EntrezGene:100853709	wikigene:100853709	MapMan:16.4.6.1	Gene3D:3.30.70.330	EMBL:AM433270	ProteinID:CAN71592
ProteinID:CAN71592.1	ProteinID:CBI23080	ProteinID:CBI23080.3	UniProt:E0CVB9	EMBL:FN595247	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	EntrezGene:LOC100853709
wikigene:LOC100853709	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR43933	PANTHER:PTHR43933:SF5
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0001984F99	ArrayExpress:VIT_16s0098g01020
EnsemblPlantsGene:VIT_16s0098g01020	EnsemblPlants:VIT_16s0098g01020.t01	RefSeq:XP_003634148	RefSeq:XP_003634148.1	RefSeq:XP_003634149	RefSeq:XP_003634149.1
RefSeq:XP_019081805.1	RefSeq:XP_019081806.1	RefSeq:XP_019081807.1	RefSeq:XP_019081808.1	RefSeq:XP_019081809.1	RefSeq:XP_019081810.1
RefSeq:XP_019081811.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr16:-:21297994..21301984

Molecular Weight (calculated)

28351.1 Da

IEP (calculated)

10.717

GRAVY (calculated)

-0.970

Length

250 amino acids

Sequence
(BLAST)

001: MSGRFSRTIY VGNLPSDIRE YEIEDLFYKY GRILDVELKI PPRPPCYCFV EFENSRDAED AIRGRDGYNF DGCRLRVELA HGGRGQSSSS DRRGGHGSGG
101: GGRFGVSRHS EYRVIVRGLP SSASWQDLKD HMRKAGDVCF AEVSRDADGT FGLVDYTNHE DMKYAIRKLD DTEFRNPWAR AYIRVKRYDV SPRSRSRSHS
201: PSRSRSLKRN RSKSLERSVS RSASKSRSPS PVRRSRSRSA SPRPARSGSA

Best Arabidopsis Sequence Match ( AT3G49430.6 )
(BLAST)

001: MSGRFSRSIY VGNLPGDIRE HEIEDIFYKY GRIVDIELKV PPRPPCYCFV EFEHSRDAED AIKGRDGYNL DGCRLRVELA HGGRGQSSSD RRGGYGGGGS
101: GYGGGGGGGG SARFGVSRHS EFRVIVRGLP SSASWQDLKD HMRKAGDVCF AEVTRDSDGT YGVVDYTNYD DMKYAIRKLD DTEFRNPWAR GFIRVKKYES
201: SRSRSRSPSR SRSRSRSRSR SRGRGRSHSR SRSLSRSKSP RKDLSKSPRR SLSRSISKSR SPSPDKKKSP PRAMSRSKSR SRSRSRSPSK SPPKVREGSV

Arabidopsis Description

SR34ASerine/arginine-rich splicing factor SR34A [Source:UniProtKB/Swiss-Prot;Acc:A2RVS6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.