Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra017986.1-P | Field mustard | nucleus | 96.19 | 97.89 |
| CDY05936 | Canola | nucleus | 99.31 | 97.29 |
| CDX86974 | Canola | nucleus | 88.93 | 95.54 |
| CDY00202 | Canola | nucleus | 89.27 | 93.82 |
| CDX94214 | Canola | cytosol | 64.36 | 93.0 |
| CDX68538 | Canola | nucleus | 85.47 | 87.59 |
| AT3G49430.4 | Thale cress | nucleus | 89.27 | 86.0 |
| KRH53616 | Soybean | nucleus | 73.01 | 80.23 |
| KRH64312 | Soybean | nucleus | 74.05 | 80.15 |
| VIT_16s0098g01020.t01 | Wine grape | nucleus | 66.78 | 77.2 |
| GSMUA_Achr1P06160_001 | Banana | nucleus | 62.28 | 72.29 |
| Solyc03g082380.2.1 | Tomato | nucleus | 68.51 | 70.71 |
| CDY66028 | Canola | cytosol | 54.67 | 62.45 |
| PGSC0003DMT400008347 | Potato | cytosol | 64.01 | 57.63 |
| CDX91319 | Canola | nucleus | 59.17 | 57.19 |
| CDX97264 | Canola | nucleus | 58.82 | 55.74 |
| CDY22050 | Canola | nucleus | 59.52 | 55.66 |
| CDY50385 | Canola | nucleus | 58.82 | 55.19 |
| CDX95008 | Canola | nucleus | 50.87 | 46.37 |
| CDY61855 | Canola | nucleus | 87.54 | 42.81 |
| CDY41599 | Canola | nucleus | 28.37 | 28.57 |
| CDX80835 | Canola | nucleus | 25.95 | 28.3 |
| CDY44717 | Canola | nucleus | 28.72 | 28.14 |
| CDY11223 | Canola | nucleus | 25.26 | 27.76 |
| CDX79732 | Canola | nucleus | 28.03 | 27.65 |
| CDX78183 | Canola | nucleus | 25.95 | 26.5 |
| CDX73550 | Canola | nucleus | 25.61 | 26.06 |
| CDY46773 | Canola | nucleus | 28.03 | 25.63 |
| CDY07586 | Canola | mitochondrion, nucleus | 25.26 | 25.35 |
| CDY52755 | Canola | mitochondrion, nucleus | 25.26 | 25.09 |
| CDY45333 | Canola | nucleus, plastid, vacuole | 4.5 | 10.66 |
Protein Annotations
| MapMan:16.4.6.1 | Gene3D:3.30.70.330 | GO:A0A078F8Q4 | UniProt:A0A078F8Q4 | EnsemblPlants:CDY08133 | ProteinID:CDY08133 |
| ProteinID:CDY08133.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00125424001 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR43933 |
| PANTHER:PTHR43933:SF5 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EE38BA |
| SEG:seg | : | : | : | : | : |
Description
BnaA06g15930DBnaA06g15930D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F8Q4]
Coordinates
chrLK031983:+:593533..596502
Molecular Weight (calculated)
32176.7 Da
IEP (calculated)
10.708
GRAVY (calculated)
-0.917
Length
289 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGRFSRSIY VGNLPGDIRE SEIEDLFYKY GRIVDIELKV PPRPPCYCFV EFEHARDAED AIDGRDGYNF DGCRLRVELA HGGRGQSSGD RRGGGGYRGG
101: GGGYGGGGGG GGSARFGVSR HSEFRVIVRG LPSSASWQDL KDHMRKAGDV CFAEVTRDSE GTYGVVDYTN YDDMKYAIRK LDDTEFRNPW ARGYIRVTKY
201: ESSQSRSPSR SRSRSRGRGR SPSRSVSRSR SPRKDLSKSP RRSLSRSVSK SRSPSPDGKK SPPRAMSRSR SLSKSPAKVY KKLHFILLF
101: GGGYGGGGGG GGSARFGVSR HSEFRVIVRG LPSSASWQDL KDHMRKAGDV CFAEVTRDSE GTYGVVDYTN YDDMKYAIRK LDDTEFRNPW ARGYIRVTKY
201: ESSQSRSPSR SRSRSRGRGR SPSRSVSRSR SPRKDLSKSP RRSLSRSVSK SRSPSPDGKK SPPRAMSRSR SLSKSPAKVY KKLHFILLF
001: MSGRFSRSIY VGNLPGDIRE HEIEDIFYKY GRIVDIELKV PPRPPCYCFV EFEHSRDAED AIKGRDGYNL DGCRLRVELA HGGRGQSSSD RRGGYGGGGS
101: GYGGGGGGGG SARFGVSRHS EFRVIVRGLP SSASWQDLKD HMRKAGDVCF AEVTRDSDGT YGVVDYTNYD DMKYAIRKLD DTEFRNPWAR GFIRVKKYES
201: SRSRSRSPSR SRSRSRSRSR SRGRGRSHSR SRSLSRSKSP RKDLSKSPRR SLSRSISKSR SPSPDKKKSP PRAMSRSKSR SRSRSRSPSK SPPKVREGSV
101: GYGGGGGGGG SARFGVSRHS EFRVIVRGLP SSASWQDLKD HMRKAGDVCF AEVTRDSDGT YGVVDYTNYD DMKYAIRKLD DTEFRNPWAR GFIRVKKYES
201: SRSRSRSPSR SRSRSRSRSR SRGRGRSHSR SRSLSRSKSP RKDLSKSPRR SLSRSISKSR SPSPDKKKSP PRAMSRSKSR SRSRSRSPSK SPPKVREGSV
Arabidopsis Description
SR34ASerine/arginine-rich splicing factor SR34A [Source:UniProtKB/Swiss-Prot;Acc:A2RVS6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.