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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • plastid 1
  • nucleus 1
  • mitochondrion 1
  • cytosol 2
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX86974 Canola nucleus 93.0 69.14
CDY00202 Canola nucleus 92.0 66.91
Bra019595.1-P Field mustard nucleus 93.5 65.61
VIT_16s0098g01020.t01 Wine grape nucleus 81.0 64.8
CDY08133 Canola cytosol 93.0 64.36
KRH53616 Soybean nucleus 83.5 63.5
CDY05936 Canola nucleus 93.0 63.05
KRH64312 Soybean nucleus 83.5 62.55
CDX68538 Canola nucleus 88.0 62.41
AT3G49430.4 Thale cress nucleus 89.0 59.33
GSMUA_Achr1P06160_001 Banana nucleus 73.5 59.04
Solyc03g082380.2.1 Tomato nucleus 79.5 56.79
CDY66028 Canola cytosol 66.0 52.17
PGSC0003DMT400008347 Potato cytosol 79.0 49.22
CDX91319 Canola nucleus 65.5 43.81
CDX97264 Canola nucleus 66.5 43.61
CDY22050 Canola nucleus 66.5 43.04
CDY50385 Canola nucleus 66.0 42.86
CDX95008 Canola nucleus 65.0 41.01
CDY61855 Canola nucleus 88.0 29.78
CDY11223 Canola nucleus 28.5 21.67
CDX80835 Canola nucleus 28.5 21.51
CDY41599 Canola nucleus 30.0 20.91
CDY44717 Canola nucleus 30.0 20.34
CDX79732 Canola nucleus 27.5 18.77
CDX78183 Canola nucleus 26.5 18.73
CDX73550 Canola nucleus 26.5 18.66
CDY07586 Canola mitochondrion, nucleus 26.0 18.06
CDY52755 Canola mitochondrion, nucleus 26.0 17.87
CDY46773 Canola nucleus 28.0 17.72
CDY45333 Canola nucleus, plastid, vacuole 6.5 10.66
Protein Annotations
EnsemblPlants:CDX94214EnsemblPlantsGene:GSBRNA2T00157160001Gene3D:3.30.70.330GO:A0A078E0L7GO:GO:0003674GO:GO:0003676
GO:GO:0005488InterPro:IPR000504InterPro:IPR012677InterPro:Nucleotide-bd_a/b_plait_sfInterPro:RBD_domain_sfInterPro:RRM_dom
PANTHER:PTHR43933PANTHER:PTHR43933:SF5PFAM:PF00076PFscan:PS50102ProteinID:CDX94214ProteinID:CDX94214.1
SEG:segSMART:SM00360SUPFAM:SSF54928UniParc:UPI0004EE78B9MapMan:16.4.6.1:
Description
BnaC07g38480D
Coordinates
chrLK031879:+:1380120..1382448
Molecular Weight (calculated)
22912.7 Da
IEP (calculated)
7.944
GRAVY (calculated)
-0.652
Length
200 amino acids
Sequence
(BLAST)
001: MSGRFSRSIY VGNLPGDIRE SEIEDLFYKY GRIVDIELKV PPRPPCYCFV EFEHARDAED AVDGRDGYNF DGCRLRVELA HGGRGQSSGD RRGGYRGGGS
101: ARFGVSRHSE FRVIVRGLPS SASWQDLKDH MRKAGDVCFA EVTRDSNGTY GLVDYTNYDD MKYAIRKLDD TEFRNPWARG YIRVWWFSSY SLNRLPSFTV
Best Arabidopsis Sequence Match ( AT3G49430.1 )
(BLAST)
001: MSGRFSRSIY VGNLPGDIRE HEIEDIFYKY GRIVDIELKV PPRPPCYCFV EFEHSRDAED AIKGRDGYNL DGCRLRVELA HGGRGQSSSD RRGGYGGGGS
101: GYGGGGGGGG SARFGVSRHS EFRVIVRGLP SSASWQDLKD HMRKAGDVCF AEVTRDSDGT YGVVDYTNYD DMKYAIRKLD DTEFRNPWAR GFIRVKKYES
201: SRSRSRSPSR SRSRSRSRSR SRGRGRSHSR SRSLSRSKSP RKDLSKSPRR SLSRSISKSR SPSPDKKKSP PRAMSRSKSR SRSRSRSPSK SPPKVREGSV
Arabidopsis Description
SR34ASerine/arginine-rich splicing factor SR34A [Source:UniProtKB/Swiss-Prot;Acc:A2RVS6]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.