Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 1
- mitochondrion 1
- cytosol 2
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDX86974 | Canola | nucleus | 93.0 | 69.14 |
CDY00202 | Canola | nucleus | 92.0 | 66.91 |
Bra019595.1-P | Field mustard | nucleus | 93.5 | 65.61 |
VIT_16s0098g01020.t01 | Wine grape | nucleus | 81.0 | 64.8 |
CDY08133 | Canola | cytosol | 93.0 | 64.36 |
KRH53616 | Soybean | nucleus | 83.5 | 63.5 |
CDY05936 | Canola | nucleus | 93.0 | 63.05 |
KRH64312 | Soybean | nucleus | 83.5 | 62.55 |
CDX68538 | Canola | nucleus | 88.0 | 62.41 |
AT3G49430.4 | Thale cress | nucleus | 89.0 | 59.33 |
GSMUA_Achr1P06160_001 | Banana | nucleus | 73.5 | 59.04 |
Solyc03g082380.2.1 | Tomato | nucleus | 79.5 | 56.79 |
CDY66028 | Canola | cytosol | 66.0 | 52.17 |
PGSC0003DMT400008347 | Potato | cytosol | 79.0 | 49.22 |
CDX91319 | Canola | nucleus | 65.5 | 43.81 |
CDX97264 | Canola | nucleus | 66.5 | 43.61 |
CDY22050 | Canola | nucleus | 66.5 | 43.04 |
CDY50385 | Canola | nucleus | 66.0 | 42.86 |
CDX95008 | Canola | nucleus | 65.0 | 41.01 |
CDY61855 | Canola | nucleus | 88.0 | 29.78 |
CDY11223 | Canola | nucleus | 28.5 | 21.67 |
CDX80835 | Canola | nucleus | 28.5 | 21.51 |
CDY41599 | Canola | nucleus | 30.0 | 20.91 |
CDY44717 | Canola | nucleus | 30.0 | 20.34 |
CDX79732 | Canola | nucleus | 27.5 | 18.77 |
CDX78183 | Canola | nucleus | 26.5 | 18.73 |
CDX73550 | Canola | nucleus | 26.5 | 18.66 |
CDY07586 | Canola | mitochondrion, nucleus | 26.0 | 18.06 |
CDY52755 | Canola | mitochondrion, nucleus | 26.0 | 17.87 |
CDY46773 | Canola | nucleus | 28.0 | 17.72 |
CDY45333 | Canola | nucleus, plastid, vacuole | 6.5 | 10.66 |
Protein Annotations
EnsemblPlants:CDX94214 | EnsemblPlantsGene:GSBRNA2T00157160001 | Gene3D:3.30.70.330 | GO:A0A078E0L7 | GO:GO:0003674 | GO:GO:0003676 |
GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
PANTHER:PTHR43933 | PANTHER:PTHR43933:SF5 | PFAM:PF00076 | PFscan:PS50102 | ProteinID:CDX94214 | ProteinID:CDX94214.1 |
SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EE78B9 | MapMan:16.4.6.1 | : |
Description
BnaC07g38480D
Coordinates
chrLK031879:+:1380120..1382448
Molecular Weight (calculated)
22912.7 Da
IEP (calculated)
7.944
GRAVY (calculated)
-0.652
Length
200 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGRFSRSIY VGNLPGDIRE SEIEDLFYKY GRIVDIELKV PPRPPCYCFV EFEHARDAED AVDGRDGYNF DGCRLRVELA HGGRGQSSGD RRGGYRGGGS
101: ARFGVSRHSE FRVIVRGLPS SASWQDLKDH MRKAGDVCFA EVTRDSNGTY GLVDYTNYDD MKYAIRKLDD TEFRNPWARG YIRVWWFSSY SLNRLPSFTV
101: ARFGVSRHSE FRVIVRGLPS SASWQDLKDH MRKAGDVCFA EVTRDSNGTY GLVDYTNYDD MKYAIRKLDD TEFRNPWARG YIRVWWFSSY SLNRLPSFTV
001: MSGRFSRSIY VGNLPGDIRE HEIEDIFYKY GRIVDIELKV PPRPPCYCFV EFEHSRDAED AIKGRDGYNL DGCRLRVELA HGGRGQSSSD RRGGYGGGGS
101: GYGGGGGGGG SARFGVSRHS EFRVIVRGLP SSASWQDLKD HMRKAGDVCF AEVTRDSDGT YGVVDYTNYD DMKYAIRKLD DTEFRNPWAR GFIRVKKYES
201: SRSRSRSPSR SRSRSRSRSR SRGRGRSHSR SRSLSRSKSP RKDLSKSPRR SLSRSISKSR SPSPDKKKSP PRAMSRSKSR SRSRSRSPSK SPPKVREGSV
101: GYGGGGGGGG SARFGVSRHS EFRVIVRGLP SSASWQDLKD HMRKAGDVCF AEVTRDSDGT YGVVDYTNYD DMKYAIRKLD DTEFRNPWAR GFIRVKKYES
201: SRSRSRSPSR SRSRSRSRSR SRGRGRSHSR SRSLSRSKSP RKDLSKSPRR SLSRSISKSR SPSPDKKKSP PRAMSRSKSR SRSRSRSPSK SPPKVREGSV
Arabidopsis Description
SR34ASerine/arginine-rich splicing factor SR34A [Source:UniProtKB/Swiss-Prot;Acc:A2RVS6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.