CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11223	Canola	nucleus	96.6	97.34
CDY41599	Canola	nucleus	73.21	67.6
CDY44717	Canola	nucleus	73.96	66.44
KRG95876	Soybean	nucleus	65.66	60.63
KRH67593	Soybean	endoplasmic reticulum	65.66	60.63
CDX73550	Canola	nucleus	62.64	58.45
CDX79732	Canola	nucleus	64.53	58.36
CDX78183	Canola	nucleus	62.26	58.3
PGSC0003DMT400060435	Potato	nucleus	64.91	57.33
CDY07586	Canola	mitochondrion, nucleus	62.26	57.29
CDY52755	Canola	mitochondrion, nucleus	62.26	56.7
KRH67596	Soybean	nucleus	63.77	56.52
CDY46773	Canola	nucleus	65.28	54.75
KRG95883	Soybean	nucleus	61.13	54.55
EES00292	Sorghum	nucleus	60.75	54.39
KXG21152	Sorghum	nucleus	61.89	52.56
Solyc09g005980.2.1	Tomato	nucleus	62.26	52.38
Solyc05g054920.2.1	Tomato	nucleus	66.04	51.93
PGSC0003DMT400061471	Potato	nucleus	61.51	51.75
VIT_08s0040g02860.t01	Wine grape	nucleus	51.7	51.5
Os01t0155600-01	Rice	nucleus	62.26	50.93
Os05t0120100-01	Rice	mitochondrion, nucleus	61.51	50.46
TraesCS1A01G108000.2	Wheat	nucleus	52.83	50.36
GSMUA_Achr6P15450_001	Banana	nucleus	63.4	49.85
HORVU1Hr1G024060.21	Barley	nucleus	56.23	49.83
TraesCS1D01G111000.2	Wheat	nucleus	53.96	49.83
TraesCS1B01G130200.3	Wheat	nucleus	53.96	49.83
KXG21387	Sorghum	nucleus	49.81	49.81
Os03t0285900-01	Rice	nucleus	61.89	49.7
GSMUA_Achr10P...	Banana	nucleus	60.75	49.54
TraesCS3B01G151100.1	Wheat	nucleus	60.0	49.23
TraesCS3D01G134500.1	Wheat	nucleus	60.0	49.07
Zm00001d011004_P008	Maize	nucleus	62.26	48.82
TraesCS1B01G065900.2	Wheat	nucleus	61.89	48.09
TraesCS1D01G051900.1	Wheat	nucleus	61.89	47.95
TraesCS3A01G308000.1	Wheat	nucleus	60.0	47.75
TraesCS1A01G049700.1	Wheat	nucleus	61.51	47.66
EES18924	Sorghum	nucleus	60.38	46.92
Zm00001d037543_P001	Maize	nucleus	31.7	46.67
Zm00001d011005_P005	Maize	nucleus	61.89	46.46
KRH42195	Soybean	endoplasmic reticulum	46.42	44.73
HORVU1Hr1G009950.7	Barley	nucleus, plastid	61.51	44.29
Zm00001d035552_P001	Maize	endoplasmic reticulum, extracellular, golgi	60.38	43.13
OQU77498	Sorghum	nucleus	17.74	42.34
KRH58317	Soybean	nucleus	32.83	39.73
Os05t0162600-01	Rice	nucleus	48.3	37.87
CDY66028	Canola	cytosol	28.68	30.04
CDX91319	Canola	nucleus	32.83	29.1
Zm00001d035551_P007	Maize	nucleus	43.02	29.08
CDX86974	Canola	nucleus	29.06	28.62
CDX94214	Canola	cytosol	21.51	28.5
CDY00202	Canola	nucleus	29.43	28.36
CDY50385	Canola	nucleus	32.45	27.92
CDX97264	Canola	nucleus	31.7	27.54
CDY22050	Canola	nucleus	32.08	27.51
CDY08133	Canola	cytosol	28.3	25.95
KXG21391	Sorghum	nucleus	38.87	25.75
CDX68538	Canola	nucleus	27.17	25.53
CDY05936	Canola	nucleus	28.3	25.42
CDX95008	Canola	nucleus	29.43	24.61
CDY45333	Canola	nucleus, plastid, vacuole	10.57	22.95
CDY61855	Canola	nucleus	27.92	12.52

Protein Annotations

MapMan:16.4.6.5	Gene3D:3.30.70.330	Gene3D:4.10.60.10	GO:A0A078CVG5	EnsemblPlants:CDX80835	ProteinID:CDX80835
ProteinID:CDX80835.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0008270	EnsemblPlantsGene:GSBRNA2T00134229001
InterPro:IPR000504	InterPro:IPR001878	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00098
PFscan:PS50102	PFscan:PS50158	PANTHER:PTHR23147	PANTHER:PTHR23147:SF21	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00343	SMART:SM00360	SUPFAM:SSF54928	SUPFAM:SSF57756	UniParc:UPI0003E6790D	InterPro:Znf_CCHC
InterPro:Znf_CCHC_sf	SEG:seg	:	:	:	:

Description

BnaC03g00890D

Coordinates

chrLK031823:+:425079..427395

Molecular Weight (calculated)

29901.4 Da

IEP (calculated)

10.844

GRAVY (calculated)

-1.464

Length

265 amino acids

Sequence
(BLAST)

001: MPRYEDRHGS TRLYVGHLSS RTRTRDVERL FSKYGRVRDV DMKRDFAFVD FSDPRDADDA RYRLDGRDVD GSRIVVEFAK GTPRGSGSGY GSREISSSRG
101: GPPPPGSGRC FNCGLDGHWA RDCTAGDWKN KCYRCGDRGH IERNCKNSPK KLKRDQSYSR SPVRSPSPPR RSRRNRSRSR SRSPSYSRSR SPVRTEKART
201: PEPAVRSRSP EPTVVNSPPL KDRNHSLSPN EKSPMPEKNG QSPKDQENGN GTNGQDHSPR DEPSP

Best Arabidopsis Sequence Match ( AT2G37340.1 )
(BLAST)

001: MPRYDDRYGN TRLYVGRLSS RTRTRDLERL FSRYGRVRDV DMKRDYAFVE FGDPRDADDA RHYLDGRDFD GSRITVEFSR GAPRGSRDFD SRGPPPGAGR
101: CFNCGVDGHW ARDCTAGDWK NKCYRCGERG HIERNCKNSP KKLRRSGSYS RSPVRSRSPR RRRSPSRSLS RSRSYSRSRS PVRRRERSVE ERSRSPKRMD
201: DSLSPRARDR SPVLDDEGSP KIIDGSPPPS PKLQKEVGSD RDGGSPQDNG RNSVVSPVVG AGGDSSKEDR SPVDDDYEPN RTSPRGSESP

Arabidopsis Description

RS2Z33Serine/arginine-rich splicing factor RS2Z33 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYA5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.