Factsheet for GSMUA_Achr10P13370_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr1P09660_001
GSMUA_Achr1P17340_001
GSMUA_Achr4P09230_001
GSMUA_Achr4P13560_001
GSMUA_Achr5P27460_001
GSMUA_Achr5P27470_001
GSMUA_Achr7P00820_001
GSMUA_Achr7P08090_001
GSMUA_Achr8P00210_001
GSMUA_Achr8P00220_001
GSMUA_Achr8P09080_001
GSMUA_Achr8P10150_001
GSMUA_Achr8P24800_001
GSMUA_Achr8P34280_001
GSMUA_Achr9P21660_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G37340.1	GSMUA_Achr11P...	AT1G02840.1	18674533
AT2G37340.1	GSMUA_Achr8P10150_001	AT1G02840.1	18674533
AT2G37340.1	GSMUA_Achr1P09660_001	AT1G23860.1	18674533
AT2G37340.1	GSMUA_AchrUn_...	AT1G23860.1	18674533
AT2G37340.1	GSMUA_Achr10P...	AT1G53720.1	16497658
AT2G37340.1	GSMUA_Achr8P09080_001	AT2G43370.1	15987817
AT2G37340.1	GSMUA_Achr4P13560_001	AT3G13570.1	18674533
AT2G37340.1	GSMUA_Achr9P21660_001	AT3G13570.1	18674533
AT2G37340.1	GSMUA_Achr10P...	AT3G50670.1	18674533
AT2G37340.1	GSMUA_Achr7P00820_001	AT3G50670.1	18674533
AT2G37340.1	GSMUA_Achr7P08090_001	AT3G50670.1	18674533
AT2G37340.1	GSMUA_Achr1P17340_001	AT3G55460.1	18674533
AT2G37340.1	GSMUA_Achr8P34280_001	AT3G55460.1	18674533
AT2G37340.1	GSMUA_Achr1P17340_001	AT3G55460.1	21798944
AT2G37340.1	GSMUA_Achr8P34280_001	AT3G55460.1	21798944
AT2G37340.1	GSMUA_Achr4P09230_001	AT4G31580.1	18674533
AT2G37340.1	GSMUA_Achr8P24800_001	AT4G31580.1	18674533
AT2G37340.1	GSMUA_Achr5P27460_001	AT5G18810.1	18674533
AT2G37340.1	GSMUA_Achr5P27470_001	AT5G18810.1	18674533
AT2G37340.1	GSMUA_Achr8P00210_001	AT5G18810.1	18674533
AT2G37340.1	GSMUA_Achr8P00220_001	AT5G18810.1	18674533
AT2G37340.1	GSMUA_Achr10P...	AT5G64200.2	18674533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	nucleus	44.31	83.24
GSMUA_Achr5P29210_001	Banana	nucleus	67.38	72.04
KRH67593	Soybean	endoplasmic reticulum	60.62	68.64
EES00292	Sorghum	nucleus	62.15	68.24
GSMUA_Achr6P15450_001	Banana	nucleus	70.15	67.66
KXG21152	Sorghum	nucleus	64.92	67.63
KRG95876	Soybean	nucleus	59.69	67.6
PGSC0003DMT400060435	Potato	nucleus	61.85	67.0
Os05t0120100-01	Rice	mitochondrion, nucleus	65.85	66.25
VIT_08s0040g02860.t01	Wine grape	nucleus	53.54	65.41
CDX79732	Canola	nucleus	57.85	64.16
CDX78183	Canola	nucleus	55.69	63.96
KRH67596	Soybean	nucleus	58.46	63.55
CDX73550	Canola	nucleus	55.38	63.38
Os03t0285900-01	Rice	nucleus	64.31	63.33
AT2G37340.1	Thale cress	nucleus	56.31	63.1
AT3G53500.2	Thale cress	mitochondrion, nucleus	55.08	63.03
KRG95883	Soybean	nucleus	57.23	62.63
Os01t0155600-01	Rice	nucleus	62.15	62.35
EES18924	Sorghum	nucleus	64.92	61.88
CDY07586	Canola	mitochondrion, nucleus	54.77	61.81
Bra003139.1-P	Field mustard	mitochondrion, nucleus	54.77	61.17
CDY52755	Canola	mitochondrion, nucleus	54.77	61.17
Bra007004.1-P	Field mustard	nucleus	55.69	60.94
CDX80835	Canola	nucleus	49.54	60.75
Zm00001d011004_P008	Maize	nucleus	62.77	60.35
Bra023114.1-P	Field mustard	nucleus	58.46	60.13
Solyc09g005980.2.1	Tomato	nucleus	58.15	60.0
TraesCS1D01G111000.2	Wheat	nucleus	52.92	59.93
TraesCS1A01G108000.2	Wheat	nucleus	51.08	59.71
CDY11223	Canola	nucleus	48.31	59.7
PGSC0003DMT400061471	Potato	nucleus	57.85	59.68
TraesCS1B01G130200.3	Wheat	nucleus	52.62	59.58
CDY46773	Canola	nucleus	57.85	59.49
Zm00001d011005_P005	Maize	nucleus	64.62	59.49
Solyc05g054920.2.1	Tomato	nucleus	61.54	59.35
TraesCS1B01G065900.2	Wheat	nucleus	62.15	59.24
TraesCS3B01G151100.1	Wheat	nucleus	58.77	59.13
TraesCS3D01G134500.1	Wheat	nucleus	58.77	58.95
TraesCS1A01G049700.1	Wheat	nucleus	61.85	58.77
TraesCS1D01G051900.1	Wheat	nucleus	61.54	58.48
Bra005756.1-P	Field mustard	nucleus	41.23	58.26
HORVU1Hr1G024060.21	Barley	nucleus	52.92	57.53
TraesCS3A01G308000.1	Wheat	nucleus	58.77	57.36
KXG21387	Sorghum	nucleus	46.15	56.6
Zm00001d035552_P001	Maize	endoplasmic reticulum, extracellular, golgi	63.08	55.26
HORVU1Hr1G009950.7	Barley	nucleus, plastid	61.85	54.62
Zm00001d037543_P001	Maize	nucleus	29.23	52.78
KRH42195	Soybean	endoplasmic reticulum	41.85	49.45
OQU77498	Sorghum	nucleus	16.31	47.75
KRH58317	Soybean	nucleus	29.85	44.29
Os05t0162600-01	Rice	nucleus	45.85	44.08
Zm00001d035551_P007	Maize	nucleus	45.54	37.76
GSMUA_Achr1P06160_001	Banana	nucleus	24.31	31.73
GSMUA_Achr11P...	Banana	nucleus	32.92	30.92
KXG21391	Sorghum	nucleus	36.31	29.5
GSMUA_Achr8P10150_001	Banana	nucleus	30.77	28.57

Protein Annotations

MapMan:16.4.6.5	Gene3D:3.30.70.330	Gene3D:4.10.60.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0008270	EnsemblPlantsGene:GSMUA_Achr10G13370_001	EnsemblPlants:GSMUA_Achr10P13370_001	EnsemblPlants:GSMUA_Achr10T13370_001	InterPro:IPR000504
InterPro:IPR001878	InterPro:IPR012677	UniProt:M0RHW3	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00098
PFscan:PS50102	PFscan:PS50158	PANTHER:PTHR23147	PANTHER:PTHR23147:SF39	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00343	SMART:SM00360	SUPFAM:SSF54928	SUPFAM:SSF57756	UniParc:UPI000296D61D	InterPro:Znf_CCHC
InterPro:Znf_CCHC_sf	SEG:seg	:	:	:	:

Description

splicing factor, arginine/serine-rich, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr10G13370_001]

Coordinates

chr10:+:22040184..22046411

Molecular Weight (calculated)

36988.3 Da

IEP (calculated)

11.612

GRAVY (calculated)

-1.680

Length

325 amino acids

Sequence
(BLAST)

001: MPRYDDRHGN TRLYVGRISY RTRSRDLEDL FGRYGRVRNV DMKRDFAFVE FSDPRDADDA RHSLDGREFD GSRIIVEFAR GGPRGPGGSR DHAGRGPPPG
101: SGRCFNCGID GHWARDCKAG DWKNRCYRCG EGGHVERNCQ NSPRNLRRGR SYSRSPSRRG RSRSRSYSRS RSYSRSRSPG RDGRGVDREN GWRSRSPQYS
201: RSPRKSPPLK ERKHSPSPDG SRSPKGRMSP PLKEEAERNG SDYDQSPRRG NSRSHSRSPM SQERESPRSR RSHSRSPMSQ ERERESPRSR RYESPAANGG
301: SPSPRDSAGD NKRYASPRGS ESPPS

Best Arabidopsis Sequence Match ( AT3G53500.2 )
(BLAST)

001: MPRYDDRYGN TRLYVGRLSS RTRTRDLERL FSRYGRVRDV DMKRDYAFVE FSDPRDADDA RYYLDGRDFD GSRITVEASR GAPRGSRDNG SRGPPPGSGR
101: CFNCGVDGHW ARDCTAGDWK NKCYRCGERG HIERNCKNSP SPKKARQGGS YSRSPVKSRS PRRRRSPSRS RSYSRGRSYS RSRSPVRREK SVEDRSRSPK
201: AMERSVSPKG RDQSLSPDRK VIDASPKRGS DYDGSPKENG NGRNSASPIV GGGESPVGLN GQDRSPIDDE AELSRPSPKG SESP

Arabidopsis Description

RS2Z32RSZ32 [Source:UniProtKB/TrEMBL;Acc:A0A178V7M8]
SUBAcon: [nucleus,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.