Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G051900.1 | Wheat | nucleus | 97.36 | 97.08 |
| TraesCS1A01G049700.1 | Wheat | nucleus | 96.19 | 95.91 |
| HORVU1Hr1G009950.7 | Barley | nucleus, plastid | 93.84 | 86.96 |
| KXG21152 | Sorghum | nucleus | 73.61 | 80.45 |
| Os05t0120100-01 | Rice | mitochondrion, nucleus | 74.19 | 78.33 |
| Os03t0285900-01 | Rice | nucleus | 74.19 | 76.67 |
| EES18924 | Sorghum | nucleus | 71.55 | 71.55 |
| Zm00001d011005_P005 | Maize | nucleus | 72.43 | 69.97 |
| Zm00001d011004_P008 | Maize | nucleus | 69.21 | 69.82 |
| KRH67593 | Soybean | endoplasmic reticulum | 57.48 | 68.29 |
| KRG95876 | Soybean | nucleus | 56.89 | 67.6 |
| PGSC0003DMT400060435 | Potato | nucleus | 59.24 | 67.33 |
| KRH67596 | Soybean | nucleus | 57.48 | 65.55 |
| Zm00001d035552_P001 | Maize | endoplasmic reticulum, extracellular, golgi | 70.67 | 64.96 |
| KRG95883 | Soybean | nucleus | 56.01 | 64.31 |
| VIT_08s0040g02860.t01 | Wine grape | nucleus | 50.15 | 64.29 |
| CDX78183 | Canola | nucleus | 52.2 | 62.9 |
| CDX79732 | Canola | nucleus | 53.96 | 62.8 |
| CDX73550 | Canola | nucleus | 51.91 | 62.32 |
| GSMUA_Achr10P... | Banana | nucleus | 59.24 | 62.15 |
| AT2G37340.1 | Thale cress | nucleus | 52.79 | 62.07 |
| CDX80835 | Canola | nucleus | 48.09 | 61.89 |
| AT3G53500.2 | Thale cress | mitochondrion, nucleus | 51.32 | 61.62 |
| CDY11223 | Canola | nucleus | 47.51 | 61.6 |
| CDY07586 | Canola | mitochondrion, nucleus | 51.03 | 60.42 |
| GSMUA_Achr6P15450_001 | Banana | nucleus | 59.24 | 59.94 |
| Bra007004.1-P | Field mustard | nucleus | 52.2 | 59.93 |
| CDY52755 | Canola | mitochondrion, nucleus | 51.03 | 59.79 |
| Bra003139.1-P | Field mustard | mitochondrion, nucleus | 51.03 | 59.79 |
| Solyc05g054920.2.1 | Tomato | nucleus | 58.94 | 59.64 |
| Bra005756.1-P | Field mustard | nucleus | 39.59 | 58.7 |
| TraesCS1B01G130200.3 | Wheat | nucleus | 49.27 | 58.54 |
| Solyc09g005980.2.1 | Tomato | nucleus | 53.96 | 58.41 |
| Bra023114.1-P | Field mustard | nucleus | 53.96 | 58.23 |
| PGSC0003DMT400061471 | Potato | nucleus | 53.67 | 58.1 |
| CDY46773 | Canola | nucleus | 53.67 | 57.91 |
| TraesCS3B01G151100.1 | Wheat | nucleus | 54.55 | 57.59 |
| KRH42195 | Soybean | endoplasmic reticulum | 40.18 | 49.82 |
| KRH58317 | Soybean | nucleus | 28.45 | 44.29 |
| Zm00001d035551_P007 | Maize | nucleus | 47.51 | 41.33 |
| TraesCS1B01G244200.1 | Wheat | cytosol, mitochondrion, nucleus | 27.86 | 35.32 |
| TraesCS3B01G293100.1 | Wheat | cytosol | 26.39 | 35.29 |
| TraesCS4B01G157000.1 | Wheat | mitochondrion, nucleus | 26.98 | 31.4 |
| TraesCS2B01G130400.1 | Wheat | nucleus | 26.98 | 26.59 |
Protein Annotations
| MapMan:16.4.6.5 | Gene3D:3.30.70.330 | Gene3D:4.10.60.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| GO:GO:0008270 | InterPro:IPR000504 | InterPro:IPR001878 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 |
| PFAM:PF00098 | PFscan:PS50102 | PFscan:PS50158 | PANTHER:PTHR23147 | PANTHER:PTHR23147:SF25 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | SMART:SM00343 | SMART:SM00360 | SUPFAM:SSF54928 | SUPFAM:SSF57756 | EnsemblPlantsGene:TraesCS1B01G065900 |
| EnsemblPlants:TraesCS1B01G065900.2 | InterPro:Znf_CCHC | InterPro:Znf_CCHC_sf | SEG:seg | : | : |
Description
No Description!
Coordinates
chr1B:-:50183778..50186297
Molecular Weight (calculated)
38378.9 Da
IEP (calculated)
11.146
GRAVY (calculated)
-1.515
Length
341 amino acids
Sequence
(BLAST)
(BLAST)
001: MECFLTFQDM PRYDDRYGNA RLYVGRLSSR TRSRDLEYLF SKYGRIREVE LKRDYAFIEY SDPRDADDAR YNLDGRDVDG SRIIVEFAKG VPRGSGGSRE
101: REYVGRGPPP GTGRCFNCGI DGHWARDCKA GDWKNKCYRC GERGHIERNC QNSPRSLRRE RSYSRSPSPR RGRARSRSYS RSRSYSRSRS RSYSESPRGR
201: RTERDERRSR SISYSRSPRR SLSPEAKEMD RSPTPDRSRS PRRSISPVAK DNGDSPRGRD KSRSPSDGYR SPVANGRSPS PANNGNPSPT RDNKGSPSPR
301: VNNGSPSPKG NGDGGSPSPR GNGDDDGRRG SGSPRGRSVS P
101: REYVGRGPPP GTGRCFNCGI DGHWARDCKA GDWKNKCYRC GERGHIERNC QNSPRSLRRE RSYSRSPSPR RGRARSRSYS RSRSYSRSRS RSYSESPRGR
201: RTERDERRSR SISYSRSPRR SLSPEAKEMD RSPTPDRSRS PRRSISPVAK DNGDSPRGRD KSRSPSDGYR SPVANGRSPS PANNGNPSPT RDNKGSPSPR
301: VNNGSPSPKG NGDGGSPSPR GNGDDDGRRG SGSPRGRSVS P
001: MPRYDDRYGN TRLYVGRLSS RTRTRDLERL FSRYGRVRDV DMKRDYAFVE FGDPRDADDA RHYLDGRDFD GSRITVEFSR GAPRGSRDFD SRGPPPGAGR
101: CFNCGVDGHW ARDCTAGDWK NKCYRCGERG HIERNCKNSP KKLRRSGSYS RSPVRSRSPR RRRSPSRSLS RSRSYSRSRS PVRRRERSVE ERSRSPKRMD
201: DSLSPRARDR SPVLDDEGSP KIIDGSPPPS PKLQKEVGSD RDGGSPQDNG RNSVVSPVVG AGGDSSKEDR SPVDDDYEPN RTSPRGSESP
101: CFNCGVDGHW ARDCTAGDWK NKCYRCGERG HIERNCKNSP KKLRRSGSYS RSPVRSRSPR RRRSPSRSLS RSRSYSRSRS PVRRRERSVE ERSRSPKRMD
201: DSLSPRARDR SPVLDDEGSP KIIDGSPPPS PKLQKEVGSD RDGGSPQDNG RNSVVSPVVG AGGDSSKEDR SPVDDDYEPN RTSPRGSESP
Arabidopsis Description
RS2Z33Serine/arginine-rich splicing factor RS2Z33 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYA5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.