Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G162900.1 | Wheat | nucleus | 97.91 | 98.32 |
| HORVU4Hr1G045510.3 | Barley | nucleus | 92.47 | 92.47 |
| TraesCS4A01G141800.2 | Wheat | nucleus | 96.23 | 92.0 |
| Os03t0363800-01 | Rice | nucleus | 76.15 | 74.9 |
| KXG39307 | Sorghum | nucleus | 72.38 | 71.78 |
| Zm00001d029256_P002 | Maize | nucleus | 70.71 | 68.98 |
| Solyc01g080660.2.1 | Tomato | nucleus | 41.0 | 59.04 |
| KRH50944 | Soybean | nucleus | 53.14 | 52.26 |
| KRH02172 | Soybean | nucleus | 53.97 | 51.6 |
| AT5G18810.1 | Thale cress | nucleus | 50.21 | 50.85 |
| VIT_14s0030g00480.t01 | Wine grape | nucleus | 58.58 | 48.78 |
| PGSC0003DMT400016115 | Potato | nucleus | 50.63 | 45.49 |
| TraesCS2B01G180200.1 | Wheat | nucleus | 35.98 | 41.55 |
| TraesCS4B01G025600.1 | Wheat | nucleus | 37.66 | 33.46 |
| TraesCS5B01G087000.2 | Wheat | nucleus, plastid | 37.66 | 30.41 |
| GSMUA_Achr8P00220_001 | Banana | extracellular | 24.27 | 26.24 |
| TraesCS2B01G188600.1 | Wheat | nucleus, plastid | 22.18 | 19.49 |
| TraesCS4B01G141700.1 | Wheat | nucleus | 19.25 | 5.79 |
Protein Annotations
| MapMan:16.4.6.2 | Gene3D:3.30.70.330 | GO:GO:0000003 | GO:GO:0000786 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005654 | GO:GO:0007283 | GO:GO:0008150 | GO:GO:0016607 | InterPro:IPR000504 | InterPro:IPR012677 |
| InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | ScanProsite:PS00048 | PFscan:PS50102 | PANTHER:PTHR23147 | PANTHER:PTHR23147:SF7 |
| InterPro:Protamine_P1 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | EnsemblPlantsGene:TraesCS4B01G156200 |
| EnsemblPlants:TraesCS4B01G156200.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr4B:-:286068167..286072985
Molecular Weight (calculated)
27976.6 Da
IEP (calculated)
11.553
GRAVY (calculated)
-1.459
Length
239 amino acids
Sequence
(BLAST)
(BLAST)
001: MARYRSRSRS RSYSPRRRYS RSPPRYRHYD DPRDRYRGGG GGGPRRGYDR PSAPTGLLVR NISLTARLED IRGPFEQFGP IKDVYLPRNF HTKELRGFGF
101: VKFHHPEDAA YAKQEMNHQV ICGREITIVF AEENRKTPQE MRFRTRSSGR HMDGNYRRRQ SLSRSPRSRY PSYSPEPSPV RRHSRDRDNY SPRGSYSPHT
201: RDKRQYISDG RSPSLDGHER RISPSSNGHG PPVDRKSPT
101: VKFHHPEDAA YAKQEMNHQV ICGREITIVF AEENRKTPQE MRFRTRSSGR HMDGNYRRRQ SLSRSPRSRY PSYSPEPSPV RRHSRDRDNY SPRGSYSPHT
201: RDKRQYISDG RSPSLDGHER RISPSSNGHG PPVDRKSPT
001: MARARSRSRS YSPRPRDRSP PRERKGYDDN RLRERPSSRD HESSGPSGLL IRNLPLDARP NDLRDSFERF GPLKDIYLPR NYYTGEPRGF GFVKYRYAED
101: AAEAMKRMNH KVIGGREIAI VFAEENRKTP QEMRTTNGTS GRHGDYKRTS HRSPRRRYRS HSRSRSPPRR ESRHSKVRED DLYSPRRRSR SISRSPLPRN
201: EREYKSRNCR SPREERVLTP IRSRCLSRSR SRSLR
101: AAEAMKRMNH KVIGGREIAI VFAEENRKTP QEMRTTNGTS GRHGDYKRTS HRSPRRRYRS HSRSRSPPRR ESRHSKVRED DLYSPRRRSR SISRSPLPRN
201: EREYKSRNCR SPREERVLTP IRSRCLSRSR SRSLR
Arabidopsis Description
SCL28Serine/arginine-rich SC35-like splicing factor SCL28 [Source:UniProtKB/Swiss-Prot;Acc:Q1PDV2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.