Skip to main content
crop-pal logo
Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:
  • nucleus 1
  • mitochondrion 2
  • cytosol 1
PPI

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G02840.1 TraesCS3A01G064900.1 AT1G53720.1 16497658
AT1G02840.1 TraesCS3D01G065600.1 AT1G53720.1 16497658
AT1G02840.1 TraesCS4A01G064400.1 AT1G53720.1 16497658
AT1G02840.1 TraesCS4B01G241800.1 AT1G53720.1 16497658
AT1G02840.1 TraesCS4D01G241400.1 AT1G53720.1 16497658
AT1G02840.1 TraesCS7A01G469800.1 AT1G53720.1 16497658
AT1G02840.1 TraesCS7B01G371900.1 AT1G53720.1 16497658
AT1G02840.1 TraesCS7D01G457200.1 AT1G53720.1 16497658
AT1G02840.1 TraesCS1A01G049700.1 AT2G37340.1 18674533
AT1G02840.1 TraesCS1A01G108000.2 AT2G37340.1 18674533
AT1G02840.1 TraesCS1B01G065900.2 AT2G37340.1 18674533
AT1G02840.1 TraesCS1B01G130200.3 AT2G37340.1 18674533
AT1G02840.1 TraesCS1D01G051900.1 AT2G37340.1 18674533
AT1G02840.1 TraesCS1D01G111000.2 AT2G37340.1 18674533
AT1G02840.1 TraesCS3A01G308000.1 AT2G37340.1 18674533
AT1G02840.1 TraesCS3B01G151100.1 AT2G37340.1 18674533
AT1G02840.1 TraesCS3D01G134500.1 AT2G37340.1 18674533
AT1G02840.1 TraesCS5A01G298000.1 AT2G43370.1 15987817
AT1G02840.1 TraesCS5B01G297000.2 AT2G43370.1 15987817
AT1G02840.1 TraesCS5D01G304800.1 AT2G43370.1 15987817
AT1G02840.1 TraesCS2A01G155100.1 AT3G13570.1 18674533
AT1G02840.1 TraesCS2B01G180200.1 AT3G13570.1 18674533
AT1G02840.1 TraesCS2D01G160400.1 AT3G13570.1 18674533
AT1G02840.1 TraesCS1A01G128600.1 AT3G50670.1 18674533
AT1G02840.1 TraesCS1A01G176500.1 AT3G50670.1 18674533
AT1G02840.1 TraesCS1B01G146600.1 AT3G50670.1 18674533
AT1G02840.1 TraesCS1B01G203600.1 AT3G50670.1 18674533
AT1G02840.1 TraesCS1D01G124800.1 AT3G50670.1 18674533
AT1G02840.1 TraesCS1D01G162500.1 AT3G50670.1 18674533
AT1G02840.1 TraesCS4A01G176000.13 AT3G55460.1 18674533
AT1G02840.1 TraesCS4A01G289300.1 AT3G55460.1 18674533
AT1G02840.1 TraesCS4B01G025600.1 AT3G55460.1 18674533
AT1G02840.1 TraesCS4B01G141700.1 AT3G55460.1 18674533
AT1G02840.1 TraesCS4D01G022700.1 AT3G55460.1 18674533
AT1G02840.1 TraesCS4D01G136700.4 AT3G55460.1 18674533
AT1G02840.1 TraesCS5A01G079000.1 AT3G55460.1 18674533
AT1G02840.1 TraesCS5B01G087000.2 AT3G55460.1 18674533
AT1G02840.1 TraesCS5D01G093200.1 AT3G55460.1 18674533
AT1G02840.1 TraesCS4A01G141800.2 AT5G18810.1 18674533
AT1G02840.1 TraesCS4B01G156200.1 AT5G18810.1 18674533
AT1G02840.1 TraesCS4D01G162900.1 AT5G18810.1 18674533
AT1G02840.1 TraesCS2A01G162700.3 AT5G64200.2 18674533
AT1G02840.1 TraesCS2B01G188600.1 AT5G64200.2 18674533
AT1G02840.1 TraesCS2D01G169700.5 AT5G64200.2 18674533
AT1G09140.1 TraesCS3A01G064900.1 AT1G53720.1 16497658
AT1G09140.1 TraesCS3D01G065600.1 AT1G53720.1 16497658
AT1G09140.1 TraesCS4A01G064400.1 AT1G53720.1 16497658
AT1G09140.1 TraesCS4B01G241800.1 AT1G53720.1 16497658
AT1G09140.1 TraesCS4D01G241400.1 AT1G53720.1 16497658
AT1G09140.1 TraesCS7A01G469800.1 AT1G53720.1 16497658
AT1G09140.1 TraesCS7B01G371900.1 AT1G53720.1 16497658
AT1G09140.1 TraesCS7D01G457200.1 AT1G53720.1 16497658
AT1G09140.1 TraesCS4A01G094800.1 AT2G29210.1 21798944
AT1G09140.1 TraesCS4B01G209700.1 AT2G29210.1 21798944
AT1G09140.1 TraesCS4D01G210400.1 AT2G29210.1 21798944
AT1G09140.1 TraesCS2A01G155100.1 AT3G13570.1 18674533
AT1G09140.1 TraesCS2B01G180200.1 AT3G13570.1 18674533
AT1G09140.1 TraesCS2D01G160400.1 AT3G13570.1 18674533
AT1G09140.1 TraesCS4A01G176000.13 AT3G55460.1 18674533
AT1G09140.1 TraesCS4A01G289300.1 AT3G55460.1 18674533
AT1G09140.1 TraesCS4B01G025600.1 AT3G55460.1 18674533
AT1G09140.1 TraesCS4B01G141700.1 AT3G55460.1 18674533
AT1G09140.1 TraesCS4D01G022700.1 AT3G55460.1 18674533
AT1G09140.1 TraesCS4D01G136700.4 AT3G55460.1 18674533
AT1G09140.1 TraesCS5A01G079000.1 AT3G55460.1 18674533
AT1G09140.1 TraesCS5B01G087000.2 AT3G55460.1 18674533
AT1G09140.1 TraesCS5D01G093200.1 AT3G55460.1 18674533
AT1G09140.1 TraesCS2A01G237400.1 AT5G04280.1 21798944
AT1G09140.1 TraesCS2B01G259400.1 AT5G04280.1 21798944
AT1G09140.1 TraesCS2D01G238900.1 AT5G04280.1 21798944
AT1G09140.1 TraesCS4A01G288500.1 AT5G04280.1 21798944
AT1G09140.1 TraesCS4B01G026400.1 AT5G04280.1 21798944
AT1G09140.1 TraesCS4D01G023800.2 AT5G04280.1 21798944
AT1G09140.1 TraesCS4A01G141800.2 AT5G18810.1 18674533
AT1G09140.1 TraesCS4B01G156200.1 AT5G18810.1 18674533
AT1G09140.1 TraesCS4D01G162900.1 AT5G18810.1 18674533
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS1A01G229900.1 Wheat cytosol, mitochondrion, nucleus 98.03 98.42
TraesCS1B01G244200.1 Wheat cytosol, mitochondrion, nucleus 94.49 89.22
KXG21829 Sorghum nucleus 80.71 73.74
TraesCS3D01G260200.1 Wheat cytosol 73.23 72.94
Bra018581.1-P Field mustard cytosol 63.39 69.4
CDY66028 Canola cytosol 65.75 66.01
Os05t0364600-01 Rice nucleus 82.68 65.83
AT1G09140.1 Thale cress cytosol 66.54 63.06
Solyc01g099810.2.1 Tomato nucleus 64.17 61.74
VIT_14s0060g02290.t01 Wine grape nucleus 69.29 61.11
TraesCS4D01G168700.1 Wheat mitochondrion, nucleus 69.69 60.41
TraesCS2D01G112200.1 Wheat nucleus 66.14 59.15
KRG92904 Soybean nucleus 63.39 58.33
CDX91319 Canola nucleus 68.5 58.19
CDY22050 Canola nucleus 68.9 56.63
CDY50385 Canola nucleus 68.5 56.49
Bra036267.1-P Field mustard nucleus 69.29 56.41
CDX97264 Canola nucleus 67.32 56.07
Bra018550.1-P Field mustard nucleus 57.48 55.94
AT1G02840.1 Thale cress nucleus 66.14 55.45
KRG96443 Soybean nucleus 67.72 54.95
VIT_07s0005g00320.t01 Wine grape nucleus 66.14 54.55
AT4G02430.4 Thale cress nucleus 61.81 53.77
Zm00001d037925_P006 Maize cytosol, nucleus, plastid 72.83 53.47
KRH68188 Soybean nucleus 62.2 52.84
PGSC0003DMT400029666 Potato nucleus 65.35 52.7
CDX95008 Canola nucleus 64.96 52.05
PGSC0003DMT400037966 Potato cytosol, extracellular, nucleus 59.45 51.71
Solyc09g075090.1.1 Tomato nucleus 60.63 50.49
PGSC0003DMT400063701 Potato nucleus 58.27 44.85
Solyc06g009060.2.1 Tomato nucleus 38.98 37.79
TraesCS1D01G111000.2 Wheat nucleus 31.5 27.87
TraesCS1D01G051900.1 Wheat nucleus 37.01 27.49
TraesCS3D01G134500.1 Wheat nucleus 34.25 26.85
Protein Annotations
EnsemblPlants:TraesCS1D01G232100.2EnsemblPlantsGene:TraesCS1D01G232100Gene3D:3.30.70.330GO:GO:0003674GO:GO:0003676GO:GO:0005488
InterPro:IPR000504InterPro:IPR012677InterPro:Nucleotide-bd_a/b_plait_sfInterPro:RBD_domain_sfInterPro:RRM_domPANTHER:PTHR43933
PANTHER:PTHR43933:SF1PFAM:PF00076PFscan:PS50102SEG:segSMART:SM00360SUPFAM:SSF54928
TIGR:cd12599TIGR:cd12602MapMan:16.4.6.1:::
Description
No Description!
Coordinates
chr1D:+:320398307..320402415
Molecular Weight (calculated)
28979.6 Da
IEP (calculated)
10.057
GRAVY (calculated)
-0.951
Length
254 amino acids
Sequence
(BLAST)
001: MSRRNGRTIY VGNLPEDIRE REIEDLFYKY GPIVDIDLKI PPRPPVYAFV EFEDPRDADD AIYGRDGYDF DGCKLRVELA HGGKGPSFDR PNSYTSSGRR
101: GALRRSDYRV IVTGLPSSAS WQDLKDHMRR AGDVCFSDVY PEAGAITGIV EYTNYEDMKH AIRKLDDSEF RNAFSRTYIR VREYNARGSR SYSRSRSRSC
201: SYSRSRSHSY SRSRSPRSSS RSLSPAAPAR DKSASRSPIR SRSLPRSQSP VKSE
Best Arabidopsis Sequence Match ( AT1G09140.1 )
(BLAST)
001: MSSRWNRTIY VGNLPGDIRK CEVEDLFYKY GPIVDIDLKI PPRPPGYAFV EFEDPRDADD AIYGRDGYDF DGCRLRVEIA HGGRRFSPSV DRYSSSYSAS
101: RAPSRRSDYR VLVTGLPPSA SWQDLKDHMR KAGDVCFSEV FPDRKGMSGV VDYSNYDDMK YAIRKLDATE FRNAFSSAYI RVREYESRSV SRSPDDSKSY
201: RSRSRSRGPS CSYSSKSRSV SPARSISPRS RPLSRSRSLY SSVSRSQSRS KSRSRSRSNS PVSPVISG
Arabidopsis Description
SR30Serine/arginine-rich splicing factor SR30 [Source:UniProtKB/Swiss-Prot;Acc:Q9XFR5]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.