Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- cytosol 1
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS1A01G229900.1 | Wheat | cytosol, mitochondrion, nucleus | 98.03 | 98.42 |
TraesCS1B01G244200.1 | Wheat | cytosol, mitochondrion, nucleus | 94.49 | 89.22 |
KXG21829 | Sorghum | nucleus | 80.71 | 73.74 |
TraesCS3D01G260200.1 | Wheat | cytosol | 73.23 | 72.94 |
Bra018581.1-P | Field mustard | cytosol | 63.39 | 69.4 |
CDY66028 | Canola | cytosol | 65.75 | 66.01 |
Os05t0364600-01 | Rice | nucleus | 82.68 | 65.83 |
AT1G09140.1 | Thale cress | cytosol | 66.54 | 63.06 |
Solyc01g099810.2.1 | Tomato | nucleus | 64.17 | 61.74 |
VIT_14s0060g02290.t01 | Wine grape | nucleus | 69.29 | 61.11 |
TraesCS4D01G168700.1 | Wheat | mitochondrion, nucleus | 69.69 | 60.41 |
TraesCS2D01G112200.1 | Wheat | nucleus | 66.14 | 59.15 |
KRG92904 | Soybean | nucleus | 63.39 | 58.33 |
CDX91319 | Canola | nucleus | 68.5 | 58.19 |
CDY22050 | Canola | nucleus | 68.9 | 56.63 |
CDY50385 | Canola | nucleus | 68.5 | 56.49 |
Bra036267.1-P | Field mustard | nucleus | 69.29 | 56.41 |
CDX97264 | Canola | nucleus | 67.32 | 56.07 |
Bra018550.1-P | Field mustard | nucleus | 57.48 | 55.94 |
AT1G02840.1 | Thale cress | nucleus | 66.14 | 55.45 |
KRG96443 | Soybean | nucleus | 67.72 | 54.95 |
VIT_07s0005g00320.t01 | Wine grape | nucleus | 66.14 | 54.55 |
AT4G02430.4 | Thale cress | nucleus | 61.81 | 53.77 |
Zm00001d037925_P006 | Maize | cytosol, nucleus, plastid | 72.83 | 53.47 |
KRH68188 | Soybean | nucleus | 62.2 | 52.84 |
PGSC0003DMT400029666 | Potato | nucleus | 65.35 | 52.7 |
CDX95008 | Canola | nucleus | 64.96 | 52.05 |
PGSC0003DMT400037966 | Potato | cytosol, extracellular, nucleus | 59.45 | 51.71 |
Solyc09g075090.1.1 | Tomato | nucleus | 60.63 | 50.49 |
PGSC0003DMT400063701 | Potato | nucleus | 58.27 | 44.85 |
Solyc06g009060.2.1 | Tomato | nucleus | 38.98 | 37.79 |
TraesCS1D01G111000.2 | Wheat | nucleus | 31.5 | 27.87 |
TraesCS1D01G051900.1 | Wheat | nucleus | 37.01 | 27.49 |
TraesCS3D01G134500.1 | Wheat | nucleus | 34.25 | 26.85 |
Protein Annotations
EnsemblPlants:TraesCS1D01G232100.2 | EnsemblPlantsGene:TraesCS1D01G232100 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom | PANTHER:PTHR43933 |
PANTHER:PTHR43933:SF1 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 |
TIGR:cd12599 | TIGR:cd12602 | MapMan:16.4.6.1 | : | : | : |
Description
No Description!
Coordinates
chr1D:+:320398307..320402415
Molecular Weight (calculated)
28979.6 Da
IEP (calculated)
10.057
GRAVY (calculated)
-0.951
Length
254 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRRNGRTIY VGNLPEDIRE REIEDLFYKY GPIVDIDLKI PPRPPVYAFV EFEDPRDADD AIYGRDGYDF DGCKLRVELA HGGKGPSFDR PNSYTSSGRR
101: GALRRSDYRV IVTGLPSSAS WQDLKDHMRR AGDVCFSDVY PEAGAITGIV EYTNYEDMKH AIRKLDDSEF RNAFSRTYIR VREYNARGSR SYSRSRSRSC
201: SYSRSRSHSY SRSRSPRSSS RSLSPAAPAR DKSASRSPIR SRSLPRSQSP VKSE
101: GALRRSDYRV IVTGLPSSAS WQDLKDHMRR AGDVCFSDVY PEAGAITGIV EYTNYEDMKH AIRKLDDSEF RNAFSRTYIR VREYNARGSR SYSRSRSRSC
201: SYSRSRSHSY SRSRSPRSSS RSLSPAAPAR DKSASRSPIR SRSLPRSQSP VKSE
001: MSSRWNRTIY VGNLPGDIRK CEVEDLFYKY GPIVDIDLKI PPRPPGYAFV EFEDPRDADD AIYGRDGYDF DGCRLRVEIA HGGRRFSPSV DRYSSSYSAS
101: RAPSRRSDYR VLVTGLPPSA SWQDLKDHMR KAGDVCFSEV FPDRKGMSGV VDYSNYDDMK YAIRKLDATE FRNAFSSAYI RVREYESRSV SRSPDDSKSY
201: RSRSRSRGPS CSYSSKSRSV SPARSISPRS RPLSRSRSLY SSVSRSQSRS KSRSRSRSNS PVSPVISG
101: RAPSRRSDYR VLVTGLPPSA SWQDLKDHMR KAGDVCFSEV FPDRKGMSGV VDYSNYDDMK YAIRKLDATE FRNAFSSAYI RVREYESRSV SRSPDDSKSY
201: RSRSRSRGPS CSYSSKSRSV SPARSISPRS RPLSRSRSLY SSVSRSQSRS KSRSRSRSNS PVSPVISG
Arabidopsis Description
SR30Serine/arginine-rich splicing factor SR30 [Source:UniProtKB/Swiss-Prot;Acc:Q9XFR5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.