Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G209700.1 | Wheat | nucleus | 96.84 | 96.61 |
| TraesCS4D01G210400.1 | Wheat | nucleus | 96.36 | 96.13 |
| HORVU4Hr1G060270.6 | Barley | nucleus | 95.51 | 95.39 |
| GSMUA_Achr9P03820_001 | Banana | cytosol | 8.13 | 81.71 |
| Os03t0270200-01 | Rice | nucleus | 61.41 | 60.24 |
| KXG39705 | Sorghum | nucleus | 58.25 | 54.55 |
| Zm00001d028579_P027 | Maize | nucleus | 57.04 | 51.88 |
| Zm00001d047831_P001 | Maize | nucleus | 16.14 | 37.25 |
| CDY45430 | Canola | nucleus | 33.98 | 33.37 |
| GSMUA_Achr10P... | Banana | nucleus | 34.1 | 33.29 |
| KRH24737 | Soybean | nucleus | 35.92 | 33.26 |
| CDY65665 | Canola | nucleus | 32.89 | 33.17 |
| Bra018407.1-P | Field mustard | nucleus | 33.86 | 33.06 |
| VIT_06s0004g05220.t01 | Wine grape | nucleus | 36.65 | 32.75 |
| KRH29744 | Soybean | nucleus | 35.56 | 31.99 |
| AT2G29210.1 | Thale cress | nucleus | 33.74 | 31.66 |
| PGSC0003DMT400071935 | Potato | nucleus | 33.37 | 31.18 |
| Solyc09g030390.2.1 | Tomato | nucleus | 34.1 | 30.51 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G094800.1 | EnsemblPlantsGene:TraesCS4A01G094800 | Gene3D:1.20.1390.10 | GO:GO:0006139 | GO:GO:0006397 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | InterPro:IPR002483 | InterPro:PWI_dom | InterPro:PWI_dom_sf | ncoils:Coil |
| PANTHER:PTHR23148 | PFAM:PF01480 | PFscan:PS51025 | SEG:seg | SMART:SM00311 | SUPFAM:SSF101233 |
| MapMan:17.3.1.2.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr4A:-:103074747..103083682
Molecular Weight (calculated)
94155.5 Da
IEP (calculated)
11.641
GRAVY (calculated)
-1.595
Length
824 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGGFFRGTS ADQDTRFSNK HAKLLKTQKF ASELDHQVDM SKVKMDVMKP WIATRVTELL GFEDEVLINF IYGLLDAKEV DGKYIQIQLT GFMEKNTIKF
101: MRELWSLLLS AQQNASGVPQ QFLDAKEAEI QQRKAEEARI AQEIQKKREK DGRDTELDKH KMMAGDTGNS RFHGDSLGSA LNNPNVDAEK EKELDLKHSS
201: RTKSREHRRP RSTSLSPRGR QRSISPRRRS PSPSRQRSSR RSASPRRSVS PRRHSPRIAP SMSRRRSPYS RRSPSVPRSP SPRRRFPIRR RSPPSGRRRS
301: PSPYRRRSPA RAPRRSPSPA RRRSPPRHRL PADRHRSPSP GRRRPRSPSP LRRRPRSPSP RRHRPRSPGR RQSLSPHRSP QLRSPKRQRK SPISTRTLSA
401: NPPVSPPRRR SSSPHSRSPN HSRRSSSRDA EKGTNGAPST KGRDLAQRNQ ERSGRGSPDF EHRRLTKSLR SPTNDAERDS TRDSPLKDTG KHMPSQDSTN
501: TSGDEEESGR ARENARKANS SRRISKDFSA DLHLKEVNVD NSVPGEKPSS RSRQDGGKDV PKKYDNQLSD SSEDALDGRR MKRQGDSPDD SRVKRQSPSR
601: AGDSYPKDGI NNERAKTDSH GASYDAIAAK KYSGKVDEAS QSDGGSPLQK AKKRTYDSKH IDRRSSGSEE SEKHRSQSEK RRHKKGHKHK KHYDDSSDSD
701: SDSDESKKRR REEKKLRKEE RRLRREERHR RRADRHASKQ RLKYAGSPLS DLEKDRQSGS DADVGKKGSY TPREEPDPNK LEIELRQRAL ESLAKKSKHV
801: ITPSSDVEKD RESDSDADVR KRVS
101: MRELWSLLLS AQQNASGVPQ QFLDAKEAEI QQRKAEEARI AQEIQKKREK DGRDTELDKH KMMAGDTGNS RFHGDSLGSA LNNPNVDAEK EKELDLKHSS
201: RTKSREHRRP RSTSLSPRGR QRSISPRRRS PSPSRQRSSR RSASPRRSVS PRRHSPRIAP SMSRRRSPYS RRSPSVPRSP SPRRRFPIRR RSPPSGRRRS
301: PSPYRRRSPA RAPRRSPSPA RRRSPPRHRL PADRHRSPSP GRRRPRSPSP LRRRPRSPSP RRHRPRSPGR RQSLSPHRSP QLRSPKRQRK SPISTRTLSA
401: NPPVSPPRRR SSSPHSRSPN HSRRSSSRDA EKGTNGAPST KGRDLAQRNQ ERSGRGSPDF EHRRLTKSLR SPTNDAERDS TRDSPLKDTG KHMPSQDSTN
501: TSGDEEESGR ARENARKANS SRRISKDFSA DLHLKEVNVD NSVPGEKPSS RSRQDGGKDV PKKYDNQLSD SSEDALDGRR MKRQGDSPDD SRVKRQSPSR
601: AGDSYPKDGI NNERAKTDSH GASYDAIAAK KYSGKVDEAS QSDGGSPLQK AKKRTYDSKH IDRRSSGSEE SEKHRSQSEK RRHKKGHKHK KHYDDSSDSD
701: SDSDESKKRR REEKKLRKEE RRLRREERHR RRADRHASKQ RLKYAGSPLS DLEKDRQSGS DADVGKKGSY TPREEPDPNK LEIELRQRAL ESLAKKSKHV
801: ITPSSDVEKD RESDSDADVR KRVS
001: MSGGFFRGTS AEQDTRFSNK QAKLMKSQKF APELENLVDI TKVKMDVMKP WIATRVTELL GIEDEVLINF IYGLLDGKVV NGKEIQITLT GFMEKNTGKF
101: MKELWTLLLS AQNNPSGVPQ QFLDARAAET KKKQEEANEI MKKREGDKKN IEHDILRKID SGVEHKETNG MDAKPSRDRP EDGRRADEKN GVKERRRDLI
201: PPRRGDASRS PLRGSRSRSI SKTNSGSKSY SGERKSRSTS QSSDASISPR KRRLSNSRRR SRSRSVRRSL SPRRRRIHSP FRSRSRSPIR RHRRPTHEGR
301: RQSPAPSRRR RSPSPPARRR RSPSPPARRR RSPSPPARRH RSPTPPARQR RSPSPPARRH RSPPPARRRR SPSPPARRRR SPSPPARRRR SPSPLYRRNR
401: SPSPLYRRNR SRSPLAKRGR SDSPGRSPSP VARLRDPTGA RLPSPSIEQR LPSPPVAQRL PSPPPRRAGL PSPPPAQRLP SPPPRRAGLP SPMRIGGSHA
501: ANHLESPSPS SLSPPGRKKV LPSPPVRRRR SLTPDEERVS LSQGGRHTSP SHIKQDGSMS PVRGRGKSSP SSRHQKARSP VRRRSPTPVN RRSRRSSSAS
601: RSPDRRRRRS PSSSRSPSRS RSPPVLHRSP SPRGRKHQRE RRSPGRLSEE QDRVQNSKLL KRTSVPDTDK RKQLPEKLLE VGRVEHYKEQ ERKSDKLSEK
701: RSVHRHHGSQ MSPVENSEGR SRPVSSKVKD SEQVEKEDNS DLDANLSCDS KDTIRHQIKD KNRRKNKRSS REEVSSDDNG SSDSDVDDRK EAKRRRKEEK
801: KTRKEEKKRR REERHRKREE RRGGKEKHKK QELSDTSEGE VEARPKIKKG EESDPKRLEI ELRNKALESL KAKKGISH
101: MKELWTLLLS AQNNPSGVPQ QFLDARAAET KKKQEEANEI MKKREGDKKN IEHDILRKID SGVEHKETNG MDAKPSRDRP EDGRRADEKN GVKERRRDLI
201: PPRRGDASRS PLRGSRSRSI SKTNSGSKSY SGERKSRSTS QSSDASISPR KRRLSNSRRR SRSRSVRRSL SPRRRRIHSP FRSRSRSPIR RHRRPTHEGR
301: RQSPAPSRRR RSPSPPARRR RSPSPPARRR RSPSPPARRH RSPTPPARQR RSPSPPARRH RSPPPARRRR SPSPPARRRR SPSPPARRRR SPSPLYRRNR
401: SPSPLYRRNR SRSPLAKRGR SDSPGRSPSP VARLRDPTGA RLPSPSIEQR LPSPPVAQRL PSPPPRRAGL PSPPPAQRLP SPPPRRAGLP SPMRIGGSHA
501: ANHLESPSPS SLSPPGRKKV LPSPPVRRRR SLTPDEERVS LSQGGRHTSP SHIKQDGSMS PVRGRGKSSP SSRHQKARSP VRRRSPTPVN RRSRRSSSAS
601: RSPDRRRRRS PSSSRSPSRS RSPPVLHRSP SPRGRKHQRE RRSPGRLSEE QDRVQNSKLL KRTSVPDTDK RKQLPEKLLE VGRVEHYKEQ ERKSDKLSEK
701: RSVHRHHGSQ MSPVENSEGR SRPVSSKVKD SEQVEKEDNS DLDANLSCDS KDTIRHQIKD KNRRKNKRSS REEVSSDDNG SSDSDVDDRK EAKRRRKEEK
801: KTRKEEKKRR REERHRKREE RRGGKEKHKK QELSDTSEGE VEARPKIKKG EESDPKRLEI ELRNKALESL KAKKGISH
Arabidopsis Description
At2g29210/F16P2.41 [Source:UniProtKB/TrEMBL;Acc:Q8L7W3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.