Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os03t0270200-01 | |
| Os07t0213400-01 | |
| Os08t0192200-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G29210.1 | Os03t0270200-01 | AT2G29210.1 | 21798944 |
| AT2G29210.1 | Os07t0213400-01 | AT4G33690.1 | 21798944 |
| AT2G29210.1 | Os08t0192200-01 | AT4G33690.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P03820_001 | Banana | cytosol | 8.1 | 82.93 |
| KXG39705 | Sorghum | nucleus | 67.14 | 64.09 |
| TraesCS4D01G210400.1 | Wheat | nucleus | 60.6 | 61.62 |
| Zm00001d028579_P027 | Maize | nucleus | 66.43 | 61.59 |
| TraesCS4A01G094800.1 | Wheat | nucleus | 60.24 | 61.41 |
| TraesCS4B01G209700.1 | Wheat | nucleus | 60.12 | 61.14 |
| HORVU4Hr1G060270.6 | Barley | nucleus | 59.76 | 60.85 |
| Zm00001d047831_P001 | Maize | nucleus | 16.55 | 38.94 |
| VIT_06s0004g05220.t01 | Wine grape | nucleus | 40.71 | 37.09 |
| GSMUA_Achr10P... | Banana | nucleus | 37.26 | 37.09 |
| PGSC0003DMT400071935 | Potato | nucleus | 37.74 | 35.94 |
| CDY45430 | Canola | nucleus | 35.83 | 35.88 |
| CDY65665 | Canola | nucleus | 34.88 | 35.86 |
| KRH24737 | Soybean | nucleus | 37.86 | 35.73 |
| Bra018407.1-P | Field mustard | nucleus | 35.71 | 35.55 |
| AT2G29210.1 | Thale cress | nucleus | 37.02 | 35.42 |
| KRH29744 | Soybean | nucleus | 38.57 | 35.37 |
| Solyc09g030390.2.1 | Tomato | nucleus | 37.5 | 34.2 |
Protein Annotations
| Gene3D:1.20.1390.10 | MapMan:17.3.1.2.2 | EntrezGene:4332383 | ProteinID:ABF95203.1 | ProteinID:ABF95204.1 | ProteinID:BAS83464.1 |
| ProteinID:BAS83465.1 | ncoils:Coil | GO:GO:0006139 | GO:GO:0006397 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | InterPro:IPR002483 | EnsemblPlantsGene:Os03g0270200 | EnsemblPlants:Os03t0270200-01 | PFAM:PF01480 | PFscan:PS51025 |
| PANTHER:PTHR23148 | InterPro:PWI_dom | InterPro:PWI_dom_sf | UniProt:Q10NF9 | SMART:SM00311 | SUPFAM:SSF101233 |
| UniParc:UPI0000DB41A5 | RefSeq:XP_015631610.1 | RefSeq:XP_015631612.1 | SEG:seg | : | : |
Description
Hypothetical conserved gene. (Os03t0270200-01);Splicing factor PWI domain containing protein. (Os03t0270200-02);Conserved hypothetical protein. (Os03t0270200-03)
Coordinates
chr3:-:9029544..9035291
Molecular Weight (calculated)
96761.6 Da
IEP (calculated)
11.789
GRAVY (calculated)
-1.710
Length
840 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGGFFRGTS ADQDTRFSNK QAKLLKTQKF APELEHLVDM TKVKMDVMKP WIATRVTELL GFEDEVLINF IYGLLEEKEA DGKKIQIQLT GFMEKNTVKF
101: MKELWSLLLS AQQNASGVPQ QFLDAKEAEI QQKKAEESRI AQEIQKKREK DGREQELEKQ KLMDGDAGNS RLGPDRADAE EEKELDSKHS SRTKSRESLR
201: SRSISLSPRG RRRSVSPRRR SPSPSRNSIS FGRQQRSSRR SVSPRRSFSP RKRSPRSTPS MSRRRSPYSR RSPSVPRHRS PSPHRRSHIR RKSPPFVRQR
301: SPSPHHRRSP GRAPRSPSPA RHRSPRRRSS LDRHWSPSPG RRRPRSPSPG RRRPRSPSPG RRRPRSPSPG RRRPRSPSPG RRRPRSPSPG RRRPRSRSPG
401: RRRSPSPRGS PRLRSPKRPR RSPISPRSRS ANRRPSPQRR RSTSPHDRSP IHSRRSLSRD IEKGTNGIPS SNDVDVLQRN KERSHDDNRN DTEVSGHLSS
501: DSEHRKLTKS LNSPNKPERN STRDSSLKGT DKHLPSQVRT DSSGEEEGSR ARENARKANS SRRKIKDFSA DLELKKAHDD LSPGEKSPSQ HSGKETRRKQ
601: NNQLSESSED ERDGRRTKHT VDSPDDSQQK QHTPSRVGMH NSYSKDGMNS EDAIKGLRDG MASKKYPAKI DDDSESEDGS PFRKDKRKAH GNNNIDSGSS
701: GSEESGKHRS HSEKRKHKKS RKHKRRYDDS SDESNSESDD KESKRRRKEE KRLRKEERRR RREERHRRKA DRQASKLKLK HAETVDMASD LEKDRESDSD
801: ADARKKGSYN GRDESDQQKL EIELREKALE SLRAKKAINH
101: MKELWSLLLS AQQNASGVPQ QFLDAKEAEI QQKKAEESRI AQEIQKKREK DGREQELEKQ KLMDGDAGNS RLGPDRADAE EEKELDSKHS SRTKSRESLR
201: SRSISLSPRG RRRSVSPRRR SPSPSRNSIS FGRQQRSSRR SVSPRRSFSP RKRSPRSTPS MSRRRSPYSR RSPSVPRHRS PSPHRRSHIR RKSPPFVRQR
301: SPSPHHRRSP GRAPRSPSPA RHRSPRRRSS LDRHWSPSPG RRRPRSPSPG RRRPRSPSPG RRRPRSPSPG RRRPRSPSPG RRRPRSPSPG RRRPRSRSPG
401: RRRSPSPRGS PRLRSPKRPR RSPISPRSRS ANRRPSPQRR RSTSPHDRSP IHSRRSLSRD IEKGTNGIPS SNDVDVLQRN KERSHDDNRN DTEVSGHLSS
501: DSEHRKLTKS LNSPNKPERN STRDSSLKGT DKHLPSQVRT DSSGEEEGSR ARENARKANS SRRKIKDFSA DLELKKAHDD LSPGEKSPSQ HSGKETRRKQ
601: NNQLSESSED ERDGRRTKHT VDSPDDSQQK QHTPSRVGMH NSYSKDGMNS EDAIKGLRDG MASKKYPAKI DDDSESEDGS PFRKDKRKAH GNNNIDSGSS
701: GSEESGKHRS HSEKRKHKKS RKHKRRYDDS SDESNSESDD KESKRRRKEE KRLRKEERRR RREERHRRKA DRQASKLKLK HAETVDMASD LEKDRESDSD
801: ADARKKGSYN GRDESDQQKL EIELREKALE SLRAKKAINH
001: MSGGFFRGTS AEQDTRFSNK QAKLMKSQKF APELENLVDI TKVKMDVMKP WIATRVTELL GIEDEVLINF IYGLLDGKVV NGKEIQITLT GFMEKNTGKF
101: MKELWTLLLS AQNNPSGVPQ QFLDARAAET KKKQEEANEI MKKREGDKKN IEHDILRKID SGVEHKETNG MDAKPSRDRP EDGRRADEKN GVKERRRDLI
201: PPRRGDASRS PLRGSRSRSI SKTNSGSKSY SGERKSRSTS QSSDASISPR KRRLSNSRRR SRSRSVRRSL SPRRRRIHSP FRSRSRSPIR RHRRPTHEGR
301: RQSPAPSRRR RSPSPPARRR RSPSPPARRR RSPSPPARRH RSPTPPARQR RSPSPPARRH RSPPPARRRR SPSPPARRRR SPSPPARRRR SPSPLYRRNR
401: SPSPLYRRNR SRSPLAKRGR SDSPGRSPSP VARLRDPTGA RLPSPSIEQR LPSPPVAQRL PSPPPRRAGL PSPPPAQRLP SPPPRRAGLP SPMRIGGSHA
501: ANHLESPSPS SLSPPGRKKV LPSPPVRRRR SLTPDEERVS LSQGGRHTSP SHIKQDGSMS PVRGRGKSSP SSRHQKARSP VRRRSPTPVN RRSRRSSSAS
601: RSPDRRRRRS PSSSRSPSRS RSPPVLHRSP SPRGRKHQRE RRSPGRLSEE QDRVQNSKLL KRTSVPDTDK RKQLPEKLLE VGRVEHYKEQ ERKSDKLSEK
701: RSVHRHHGSQ MSPVENSEGR SRPVSSKVKD SEQVEKEDNS DLDANLSCDS KDTIRHQIKD KNRRKNKRSS REEVSSDDNG SSDSDVDDRK EAKRRRKEEK
801: KTRKEEKKRR REERHRKREE RRGGKEKHKK QELSDTSEGE VEARPKIKKG EESDPKRLEI ELRNKALESL KAKKGISH
101: MKELWTLLLS AQNNPSGVPQ QFLDARAAET KKKQEEANEI MKKREGDKKN IEHDILRKID SGVEHKETNG MDAKPSRDRP EDGRRADEKN GVKERRRDLI
201: PPRRGDASRS PLRGSRSRSI SKTNSGSKSY SGERKSRSTS QSSDASISPR KRRLSNSRRR SRSRSVRRSL SPRRRRIHSP FRSRSRSPIR RHRRPTHEGR
301: RQSPAPSRRR RSPSPPARRR RSPSPPARRR RSPSPPARRH RSPTPPARQR RSPSPPARRH RSPPPARRRR SPSPPARRRR SPSPPARRRR SPSPLYRRNR
401: SPSPLYRRNR SRSPLAKRGR SDSPGRSPSP VARLRDPTGA RLPSPSIEQR LPSPPVAQRL PSPPPRRAGL PSPPPAQRLP SPPPRRAGLP SPMRIGGSHA
501: ANHLESPSPS SLSPPGRKKV LPSPPVRRRR SLTPDEERVS LSQGGRHTSP SHIKQDGSMS PVRGRGKSSP SSRHQKARSP VRRRSPTPVN RRSRRSSSAS
601: RSPDRRRRRS PSSSRSPSRS RSPPVLHRSP SPRGRKHQRE RRSPGRLSEE QDRVQNSKLL KRTSVPDTDK RKQLPEKLLE VGRVEHYKEQ ERKSDKLSEK
701: RSVHRHHGSQ MSPVENSEGR SRPVSSKVKD SEQVEKEDNS DLDANLSCDS KDTIRHQIKD KNRRKNKRSS REEVSSDDNG SSDSDVDDRK EAKRRRKEEK
801: KTRKEEKKRR REERHRKREE RRGGKEKHKK QELSDTSEGE VEARPKIKKG EESDPKRLEI ELRNKALESL KAKKGISH
Arabidopsis Description
At2g29210/F16P2.41 [Source:UniProtKB/TrEMBL;Acc:Q8L7W3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.