Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr10P... | |
| GSMUA_Achr6P16520_001 | |
| GSMUA_Achr9P03820_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G29210.1 | GSMUA_Achr10P... | AT2G29210.1 | 21798944 |
| AT2G29210.1 | GSMUA_Achr9P03820_001 | AT2G29210.1 | 21798944 |
| AT2G29210.1 | GSMUA_Achr6P16520_001 | AT4G33690.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P03820_001 | Banana | cytosol | 8.53 | 87.8 |
| Os03t0270200-01 | Rice | nucleus | 37.09 | 37.26 |
| KXG39705 | Sorghum | nucleus | 36.26 | 34.77 |
| VIT_06s0004g05220.t01 | Wine grape | nucleus | 37.91 | 34.71 |
| HORVU4Hr1G060270.6 | Barley | nucleus | 33.65 | 34.42 |
| TraesCS4D01G210400.1 | Wheat | nucleus | 33.65 | 34.38 |
| Zm00001d028579_P027 | Maize | nucleus | 36.73 | 34.22 |
| KRH24737 | Soybean | nucleus | 36.02 | 34.16 |
| TraesCS4B01G209700.1 | Wheat | nucleus | 33.41 | 34.14 |
| TraesCS4A01G094800.1 | Wheat | nucleus | 33.29 | 34.1 |
| KRH29744 | Soybean | nucleus | 35.66 | 32.86 |
| PGSC0003DMT400071935 | Potato | nucleus | 33.77 | 32.31 |
| Solyc09g030390.2.1 | Tomato | nucleus | 34.48 | 31.6 |
| CDY65665 | Canola | nucleus | 30.57 | 31.58 |
| CDY45430 | Canola | nucleus | 30.81 | 30.99 |
| AT2G29210.1 | Thale cress | nucleus | 31.99 | 30.75 |
| Bra018407.1-P | Field mustard | nucleus | 30.33 | 30.33 |
| Zm00001d047831_P001 | Maize | nucleus | 9.24 | 21.85 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr10P00800_001 | EnsemblPlants:GSMUA_Achr10T00800_001 | EnsemblPlantsGene:GSMUA_Achr10G00800_001 | Gene3D:1.20.1390.10 | GO:GO:0006139 | GO:GO:0006397 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | InterPro:IPR002483 | InterPro:PWI_dom | InterPro:PWI_dom_sf |
| ncoils:Coil | PFAM:PF01480 | PFscan:PS51025 | SEG:seg | SMART:SM00311 | SUPFAM:SSF101233 |
| UniParc:UPI000294FF06 | UniProt:M0REA7 | MapMan:17.3.1.2.2 | : | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr10G00800_001]
Coordinates
chr10:-:1441746..1449784
Molecular Weight (calculated)
97628.8 Da
IEP (calculated)
10.979
GRAVY (calculated)
-1.441
Length
844 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGGFFRGTS AEQDTRFSNK QAKLLKTQKF APVLDHPVDV TKVKMDVIRP WIATRATELL GFEDEVLINF VYGLLDGKAC FFMQVDGKQI QIQLTGFLEK
101: NTGKFMKELW GLLLSAQNNA SGVPQQFLDA KEEELKKRMA ESERITQEIQ KRKEKEGREF EQEKQKRMDA EAGITAVSGS SLKHSLPKDS RVQSEERDME
201: TKQSPRLKRR EGRSRSRSLS SHSQGHSLSP SRRYHSPHRR AMSSERQYKS PARRSISPRH TYSPRSNWSP SRRRSPRRRS PSPIRRKSPY GRRSPLLRCR
301: SPPSRHRSPV QNRRRSPSPS RHRRSPSPSR QRRPPAARRV SPIRRRSLSP ARDKAVSPWR SPRNRFQQQK RSLHSPGNYG GDSQVSLRAR KRSSSPHRSI
401: SPSYPAHRGS SRETDTRSNG YDSKRRRDKY SPKRAREKRS PVHHTLHREV VDHSDFKGNI LDPLPHILTV SSRSSSPDSR DQNDIHSKDY DVPSENSSEQ
501: SDSPSHLRKS PTRRNRLSEK RLPNNIQEIN DNNEESYVVR EDAYCRTDSS SKKGRDSAAD MKKKRFHAKK FSQEEFSNNG LEVDHSPSNQ DRHSNMGIKN
601: KETVRKSYTE YGPERVQGEK HSMEVSYDRQ HSTKITVQVA SASVVSNELV LKSSRADLSV SDAEKRAKSR SDACRESHYE TESVKKSERK MDTSSQAHSN
701: HSDSEETNTH KYRSAKKRHK KSDRHRKEDE TSEPDSHTED KEAKRRRKDE KRLRKEERRR KREDKHRKRS ERHAEKLKVK SIDTVTPPPD FEKYDYGKSD
801: GEASIKTTSR LADAEGTESE EKRLEIELRE KALESLRAKK GIGH
101: NTGKFMKELW GLLLSAQNNA SGVPQQFLDA KEEELKKRMA ESERITQEIQ KRKEKEGREF EQEKQKRMDA EAGITAVSGS SLKHSLPKDS RVQSEERDME
201: TKQSPRLKRR EGRSRSRSLS SHSQGHSLSP SRRYHSPHRR AMSSERQYKS PARRSISPRH TYSPRSNWSP SRRRSPRRRS PSPIRRKSPY GRRSPLLRCR
301: SPPSRHRSPV QNRRRSPSPS RHRRSPSPSR QRRPPAARRV SPIRRRSLSP ARDKAVSPWR SPRNRFQQQK RSLHSPGNYG GDSQVSLRAR KRSSSPHRSI
401: SPSYPAHRGS SRETDTRSNG YDSKRRRDKY SPKRAREKRS PVHHTLHREV VDHSDFKGNI LDPLPHILTV SSRSSSPDSR DQNDIHSKDY DVPSENSSEQ
501: SDSPSHLRKS PTRRNRLSEK RLPNNIQEIN DNNEESYVVR EDAYCRTDSS SKKGRDSAAD MKKKRFHAKK FSQEEFSNNG LEVDHSPSNQ DRHSNMGIKN
601: KETVRKSYTE YGPERVQGEK HSMEVSYDRQ HSTKITVQVA SASVVSNELV LKSSRADLSV SDAEKRAKSR SDACRESHYE TESVKKSERK MDTSSQAHSN
701: HSDSEETNTH KYRSAKKRHK KSDRHRKEDE TSEPDSHTED KEAKRRRKDE KRLRKEERRR KREDKHRKRS ERHAEKLKVK SIDTVTPPPD FEKYDYGKSD
801: GEASIKTTSR LADAEGTESE EKRLEIELRE KALESLRAKK GIGH
001: MSGGFFRGTS AEQDTRFSNK QAKLMKSQKF APELENLVDI TKVKMDVMKP WIATRVTELL GIEDEVLINF IYGLLDGKVV NGKEIQITLT GFMEKNTGKF
101: MKELWTLLLS AQNNPSGVPQ QFLDARAAET KKKQEEANEI MKKREGDKKN IEHDILRKID SGVEHKETNG MDAKPSRDRP EDGRRADEKN GVKERRRDLI
201: PPRRGDASRS PLRGSRSRSI SKTNSGSKSY SGERKSRSTS QSSDASISPR KRRLSNSRRR SRSRSVRRSL SPRRRRIHSP FRSRSRSPIR RHRRPTHEGR
301: RQSPAPSRRR RSPSPPARRR RSPSPPARRR RSPSPPARRH RSPTPPARQR RSPSPPARRH RSPPPARRRR SPSPPARRRR SPSPPARRRR SPSPLYRRNR
401: SPSPLYRRNR SRSPLAKRGR SDSPGRSPSP VARLRDPTGA RLPSPSIEQR LPSPPVAQRL PSPPPRRAGL PSPMRIGGSH AANHLESPSP SSLSPPGRKK
501: VLPSPPVRRR RSLTPDEERV SLSQGGRHTS PSHIKQDGSM SPVRGRGKSS PSSRHQKARS PVRRRSPTPV NRRSRRSSSA SRSPDRRRRR SPSSSRSPSR
601: SRSPPVLHRS PSPRGRKHQR ERRSPGRLSE EQDRVQNSKL LKRTSVPDTD KRKQLPEKLL EVGRVEHYKE QERKSDKLSE KRSVHRHHGS QMSPVENSEG
701: RSRPVSSKVK DSEQVEKEDN SDLDANLSCD SKDTIRHQIK DKNRRKNKRS SREEVSSDDN GSSDSDVDDR KEAKRRRKEE KKTRKEEKKR RREERHRKRE
801: ERRGGKEKHK KQELSDTSEG EVEARPKIKK GEESDPKRLE IELRNKALES LKAKKGISH
101: MKELWTLLLS AQNNPSGVPQ QFLDARAAET KKKQEEANEI MKKREGDKKN IEHDILRKID SGVEHKETNG MDAKPSRDRP EDGRRADEKN GVKERRRDLI
201: PPRRGDASRS PLRGSRSRSI SKTNSGSKSY SGERKSRSTS QSSDASISPR KRRLSNSRRR SRSRSVRRSL SPRRRRIHSP FRSRSRSPIR RHRRPTHEGR
301: RQSPAPSRRR RSPSPPARRR RSPSPPARRR RSPSPPARRH RSPTPPARQR RSPSPPARRH RSPPPARRRR SPSPPARRRR SPSPPARRRR SPSPLYRRNR
401: SPSPLYRRNR SRSPLAKRGR SDSPGRSPSP VARLRDPTGA RLPSPSIEQR LPSPPVAQRL PSPPPRRAGL PSPMRIGGSH AANHLESPSP SSLSPPGRKK
501: VLPSPPVRRR RSLTPDEERV SLSQGGRHTS PSHIKQDGSM SPVRGRGKSS PSSRHQKARS PVRRRSPTPV NRRSRRSSSA SRSPDRRRRR SPSSSRSPSR
601: SRSPPVLHRS PSPRGRKHQR ERRSPGRLSE EQDRVQNSKL LKRTSVPDTD KRKQLPEKLL EVGRVEHYKE QERKSDKLSE KRSVHRHHGS QMSPVENSEG
701: RSRPVSSKVK DSEQVEKEDN SDLDANLSCD SKDTIRHQIK DKNRRKNKRS SREEVSSDDN GSSDSDVDDR KEAKRRRKEE KKTRKEEKKR RREERHRKRE
801: ERRGGKEKHK KQELSDTSEG EVEARPKIKK GEESDPKRLE IELRNKALES LKAKKGISH
Arabidopsis Description
At2g29210/F16P2.41 [Source:UniProtKB/TrEMBL;Acc:Q8L7W3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.