Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G209700.1 | Wheat | nucleus | 96.49 | 96.49 |
| TraesCS4A01G094800.1 | Wheat | nucleus | 96.13 | 96.36 |
| HORVU4Hr1G060270.6 | Barley | nucleus | 95.16 | 95.27 |
| GSMUA_Achr9P03820_001 | Banana | cytosol | 8.11 | 81.71 |
| Os03t0270200-01 | Rice | nucleus | 61.62 | 60.6 |
| KXG39705 | Sorghum | nucleus | 58.23 | 54.66 |
| Zm00001d028579_P027 | Maize | nucleus | 56.9 | 51.88 |
| Zm00001d047831_P001 | Maize | nucleus | 15.86 | 36.69 |
| GSMUA_Achr10P... | Banana | nucleus | 34.38 | 33.65 |
| KRH24737 | Soybean | nucleus | 35.84 | 33.26 |
| CDY45430 | Canola | nucleus | 33.78 | 33.25 |
| VIT_06s0004g05220.t01 | Wine grape | nucleus | 36.8 | 32.97 |
| Bra018407.1-P | Field mustard | nucleus | 33.66 | 32.94 |
| CDY65665 | Canola | nucleus | 32.57 | 32.93 |
| KRH29744 | Soybean | nucleus | 35.59 | 32.1 |
| AT2G29210.1 | Thale cress | nucleus | 33.66 | 31.66 |
| PGSC0003DMT400071935 | Potato | nucleus | 33.41 | 31.29 |
| Solyc09g030390.2.1 | Tomato | nucleus | 34.14 | 30.62 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G210400.1 | EnsemblPlantsGene:TraesCS4D01G210400 | Gene3D:1.20.1390.10 | GO:GO:0006139 | GO:GO:0006397 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | InterPro:IPR002483 | InterPro:PWI_dom | InterPro:PWI_dom_sf | ncoils:Coil |
| PFAM:PF01480 | PFscan:PS51025 | SEG:seg | SMART:SM00311 | SUPFAM:SSF101233 | MapMan:17.3.1.2.2 |
Description
No Description!
Coordinates
chr4D:+:362114349..362123933
Molecular Weight (calculated)
94277.7 Da
IEP (calculated)
11.612
GRAVY (calculated)
-1.563
Length
826 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGGFFRGTS ADQDTRFSNK HAKLLKTQKF ASELDHQVDM SKVKMDVMKP WIATRVTELL GFEDEVLINF IYGLLDAKEV DGKYIQIQLT GFMEKNTIKF
101: MRELWSLLLS AQQNASGVPQ QFLDAKEAEI QQRKAEEARI AQEIQKKREK DGRDTELDKH KMMAGDTGNS RSHGDSLGSA LNNPNVDAEK EKELDLKHSS
201: RTKSREHRRP RSTSLSPRGR QRSISPRRRS PSPSRQRSSR RSASPRRSVS PRRHSPRVAP SVSRRRSPYS RRSPSVPRSP SPRRRFPIRR RSPPSGRRRS
301: PSPYRRRSPA RAPRRSPSPA RRRSPPRHRL PADRHRSPSP GRRRPRSPSP VRRRPRSPSP RRHRPRSPGR RQSLSPHRSL QLRSPKRQRK SPISIRTLSA
401: NRPVSPQRRR SSSPHSRSPN RSRRSSSRDA EKGTNGAPST KGRDLAQRNQ ERSGRESPDF EHRRLTKSLR SPTNDAKRDS TRGSPLKDTG KHMPSQDSTN
501: TSGDEEEGGR ARENARKANS SRRVSKDFSA DLQLKEVNVD NSIPGEKPSS RSRQYGGKDV PKKYDNQLSD SSEDALDGRR MKRQGDSPDD SPVKRQSPSR
601: AGDSYPKDGI NNERAKTDSF GASYDAIAAK KYSGKVDEAF QSDGGSPLQK AKKRTYDSKH IDHGSSGSEE SEKHRSQSEK RGHKKGHKHK KHYDDSFDSD
701: SDSDDKESKR RRREEKKLRK EERRLRREER HRRRADRHAS KQKLKYAGSP LSDLEKDRQS GSDADVGKKG SYTPREEPDP NKLEIELRQR ALESLAKKSK
801: HVVTPSSDVE KDRESDSDAD VRKRVS
101: MRELWSLLLS AQQNASGVPQ QFLDAKEAEI QQRKAEEARI AQEIQKKREK DGRDTELDKH KMMAGDTGNS RSHGDSLGSA LNNPNVDAEK EKELDLKHSS
201: RTKSREHRRP RSTSLSPRGR QRSISPRRRS PSPSRQRSSR RSASPRRSVS PRRHSPRVAP SVSRRRSPYS RRSPSVPRSP SPRRRFPIRR RSPPSGRRRS
301: PSPYRRRSPA RAPRRSPSPA RRRSPPRHRL PADRHRSPSP GRRRPRSPSP VRRRPRSPSP RRHRPRSPGR RQSLSPHRSL QLRSPKRQRK SPISIRTLSA
401: NRPVSPQRRR SSSPHSRSPN RSRRSSSRDA EKGTNGAPST KGRDLAQRNQ ERSGRESPDF EHRRLTKSLR SPTNDAKRDS TRGSPLKDTG KHMPSQDSTN
501: TSGDEEEGGR ARENARKANS SRRVSKDFSA DLQLKEVNVD NSIPGEKPSS RSRQYGGKDV PKKYDNQLSD SSEDALDGRR MKRQGDSPDD SPVKRQSPSR
601: AGDSYPKDGI NNERAKTDSF GASYDAIAAK KYSGKVDEAF QSDGGSPLQK AKKRTYDSKH IDHGSSGSEE SEKHRSQSEK RGHKKGHKHK KHYDDSFDSD
701: SDSDDKESKR RRREEKKLRK EERRLRREER HRRRADRHAS KQKLKYAGSP LSDLEKDRQS GSDADVGKKG SYTPREEPDP NKLEIELRQR ALESLAKKSK
801: HVVTPSSDVE KDRESDSDAD VRKRVS
001: MSGGFFRGTS AEQDTRFSNK QAKLMKSQKF APELENLVDI TKVKMDVMKP WIATRVTELL GIEDEVLINF IYGLLDGKVV NGKEIQITLT GFMEKNTGKF
101: MKELWTLLLS AQNNPSGVPQ QFLDARAAET KKKQEEANEI MKKREGDKKN IEHDILRKID SGVEHKETNG MDAKPSRDRP EDGRRADEKN GVKERRRDLI
201: PPRRGDASRS PLRGSRSRSI SKTNSGSKSY SGERKSRSTS QSSDASISPR KRRLSNSRRR SRSRSVRRSL SPRRRRIHSP FRSRSRSPIR RHRRPTHEGR
301: RQSPAPSRRR RSPSPPARRR RSPSPPARRR RSPSPPARRH RSPTPPARQR RSPSPPARRH RSPPPARRRR SPSPPARRRR SPSPPARRRR SPSPLYRRNR
401: SPSPLYRRNR SRSPLAKRGR SDSPGRSPSP VARLRDPTGA RLPSPSIEQR LPSPPVAQRL PSPPPRRAGL PSPPPAQRLP SPPPRRAGLP SPMRIGGSHA
501: ANHLESPSPS SLSPPGRKKV LPSPPVRRRR SLTPDEERVS LSQGGRHTSP SHIKQDGSMS PVRGRGKSSP SSRHQKARSP VRRRSPTPVN RRSRRSSSAS
601: RSPDRRRRRS PSSSRSPSRS RSPPVLHRSP SPRGRKHQRE RRSPGRLSEE QDRVQNSKLL KRTSVPDTDK RKQLPEKLLE VGRVEHYKEQ ERKSDKLSEK
701: RSVHRHHGSQ MSPVENSEGR SRPVSSKVKD SEQVEKEDNS DLDANLSCDS KDTIRHQIKD KNRRKNKRSS REEVSSDDNG SSDSDVDDRK EAKRRRKEEK
801: KTRKEEKKRR REERHRKREE RRGGKEKHKK QELSDTSEGE VEARPKIKKG EESDPKRLEI ELRNKALESL KAKKGISH
101: MKELWTLLLS AQNNPSGVPQ QFLDARAAET KKKQEEANEI MKKREGDKKN IEHDILRKID SGVEHKETNG MDAKPSRDRP EDGRRADEKN GVKERRRDLI
201: PPRRGDASRS PLRGSRSRSI SKTNSGSKSY SGERKSRSTS QSSDASISPR KRRLSNSRRR SRSRSVRRSL SPRRRRIHSP FRSRSRSPIR RHRRPTHEGR
301: RQSPAPSRRR RSPSPPARRR RSPSPPARRR RSPSPPARRH RSPTPPARQR RSPSPPARRH RSPPPARRRR SPSPPARRRR SPSPPARRRR SPSPLYRRNR
401: SPSPLYRRNR SRSPLAKRGR SDSPGRSPSP VARLRDPTGA RLPSPSIEQR LPSPPVAQRL PSPPPRRAGL PSPPPAQRLP SPPPRRAGLP SPMRIGGSHA
501: ANHLESPSPS SLSPPGRKKV LPSPPVRRRR SLTPDEERVS LSQGGRHTSP SHIKQDGSMS PVRGRGKSSP SSRHQKARSP VRRRSPTPVN RRSRRSSSAS
601: RSPDRRRRRS PSSSRSPSRS RSPPVLHRSP SPRGRKHQRE RRSPGRLSEE QDRVQNSKLL KRTSVPDTDK RKQLPEKLLE VGRVEHYKEQ ERKSDKLSEK
701: RSVHRHHGSQ MSPVENSEGR SRPVSSKVKD SEQVEKEDNS DLDANLSCDS KDTIRHQIKD KNRRKNKRSS REEVSSDDNG SSDSDVDDRK EAKRRRKEEK
801: KTRKEEKKRR REERHRKREE RRGGKEKHKK QELSDTSEGE VEARPKIKKG EESDPKRLEI ELRNKALESL KAKKGISH
Arabidopsis Description
At2g29210/F16P2.41 [Source:UniProtKB/TrEMBL;Acc:Q8L7W3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.