Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d019181_P001 | |
| Zm00001d021873_P001 | |
| Zm00001d028579_P027 | |
| Zm00001d047831_P001 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG39705 | Sorghum | nucleus | 80.24 | 82.61 |
| GSMUA_Achr9P03820_001 | Banana | cytosol | 7.28 | 80.49 |
| Os03t0270200-01 | Rice | nucleus | 61.59 | 66.43 |
| TraesCS4A01G094800.1 | Wheat | nucleus | 51.88 | 57.04 |
| TraesCS4D01G210400.1 | Wheat | nucleus | 51.88 | 56.9 |
| TraesCS4B01G209700.1 | Wheat | nucleus | 51.77 | 56.78 |
| HORVU4Hr1G060270.6 | Barley | nucleus | 51.1 | 56.12 |
| Zm00001d047831_P001 | Maize | nucleus | 21.19 | 53.78 |
| VIT_06s0004g05220.t01 | Wine grape | nucleus | 37.75 | 37.09 |
| GSMUA_Achr10P... | Banana | nucleus | 34.22 | 36.73 |
| KRH29744 | Soybean | nucleus | 36.09 | 35.7 |
| AT2G29210.1 | Thale cress | nucleus | 34.55 | 35.65 |
| KRH24737 | Soybean | nucleus | 34.88 | 35.51 |
| CDY65665 | Canola | nucleus | 32.01 | 35.5 |
| CDY45430 | Canola | nucleus | 32.56 | 35.16 |
| PGSC0003DMT400071935 | Potato | nucleus | 34.22 | 35.15 |
| Bra018407.1-P | Field mustard | nucleus | 32.56 | 34.95 |
| Solyc09g030390.2.1 | Tomato | nucleus | 35.32 | 34.74 |
Protein Annotations
| Gene3D:1.20.1390.10 | EntrezGene:100304415 | MapMan:17.3.1.2.2 | UniProt:A0A1D6JXU1 | ncoils:Coil | GO:GO:0006139 |
| GO:GO:0006397 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | InterPro:IPR002483 | ProteinID:ONL96480.1 |
| PFAM:PF01480 | PFscan:PS51025 | InterPro:PWI_dom | InterPro:PWI_dom_sf | SMART:SM00311 | SUPFAM:SSF101233 |
| UniParc:UPI0004DEBBAB | EnsemblPlantsGene:Zm00001d028579 | EnsemblPlants:Zm00001d028579_P027 | EnsemblPlants:Zm00001d028579_T027 | SEG:seg | : |
Description
splicing factor PWI domain-containing protein
Coordinates
chr1:-:39747936..39755436
Molecular Weight (calculated)
104265.0 Da
IEP (calculated)
11.965
GRAVY (calculated)
-1.688
Length
906 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGGFFRGTS ADQDTRFSNK QAKLLKTQKF APELDHLVDT SKVKMDVMKP WIAKRVTELL GFEDEVLINF IYGLLEEKEA DGKKIQIQLT GFMEKNTVKF
101: MRELWTLLLS AQQNASGVPQ QFLDEKEAEI QQKKAEDDRI AQEIQKKREM EENDSELVKN KVMDGDAGNS RSYGDPVGSA LNSTNFNTEE EKNNDFKRSL
201: RAKNRFFLSR GSRRSRSISL SPRARQRSIS PRNNSRSPPR RSHSIDRHHR SSWRSTSPRR SISPRRHSPR STPSISRRRS PYSRRGSPSL SRYPSPFTRR
301: RSPLRRKSPS SGPLRSLSPR HRRSPARVPR RSPSPASRRS PVRRRFSPGR RTSPSPVRRR PRSPSPGRRR PRSPSPGRRR PRSPSPRRRR PRSPSPGRRR
401: PRSPSPGRRR LRSPSPGRRR PRSPSPGRRR PRSPSPGRRR PRSPSPGRRR PRSPSPGRRR PWSRSPIRRQ SPSPKRQRTS PSSPKTRSAN RPLSPEGRRS
501: TSPYNSRSPN RSRQSLSKDT EKETNGTPSV KDRVVHSRGQ EQKSDDNNRD GARIVGNNSP DSEHRLSKSL RPPNYEERNS TRDSSYKNSD KPIPSQGSTD
601: TSGDEEHSRA RENARKANSC RRKTKDLSAG LQPKKISAGD SSPRDKSPFI LQQSGKVVQK KHPDQLSESS EDELAGRRTK HQTDSPDDSR RKQHSPTRIE
701: NDESYSKGGR NSEHVMRGLR DDSDDAIDTK KYLSKVNEDS QSDDGSPLKK TKKKTDGNRH IDSGSSGSEE PDKHRTHSEK RRHKKTHKHK KQYDDSSESD
801: SEPDGKDAKR RRRKEEKRLR KEERRRRREE RHRRRAERHA SKRKLKNTDT VTMPSDSEKD RDSDSDGDVR KRVSNAGREE SDQKKLEIEL REKALESLRA
901: KKAINN
101: MRELWTLLLS AQQNASGVPQ QFLDEKEAEI QQKKAEDDRI AQEIQKKREM EENDSELVKN KVMDGDAGNS RSYGDPVGSA LNSTNFNTEE EKNNDFKRSL
201: RAKNRFFLSR GSRRSRSISL SPRARQRSIS PRNNSRSPPR RSHSIDRHHR SSWRSTSPRR SISPRRHSPR STPSISRRRS PYSRRGSPSL SRYPSPFTRR
301: RSPLRRKSPS SGPLRSLSPR HRRSPARVPR RSPSPASRRS PVRRRFSPGR RTSPSPVRRR PRSPSPGRRR PRSPSPGRRR PRSPSPRRRR PRSPSPGRRR
401: PRSPSPGRRR LRSPSPGRRR PRSPSPGRRR PRSPSPGRRR PRSPSPGRRR PRSPSPGRRR PWSRSPIRRQ SPSPKRQRTS PSSPKTRSAN RPLSPEGRRS
501: TSPYNSRSPN RSRQSLSKDT EKETNGTPSV KDRVVHSRGQ EQKSDDNNRD GARIVGNNSP DSEHRLSKSL RPPNYEERNS TRDSSYKNSD KPIPSQGSTD
601: TSGDEEHSRA RENARKANSC RRKTKDLSAG LQPKKISAGD SSPRDKSPFI LQQSGKVVQK KHPDQLSESS EDELAGRRTK HQTDSPDDSR RKQHSPTRIE
701: NDESYSKGGR NSEHVMRGLR DDSDDAIDTK KYLSKVNEDS QSDDGSPLKK TKKKTDGNRH IDSGSSGSEE PDKHRTHSEK RRHKKTHKHK KQYDDSSESD
801: SEPDGKDAKR RRRKEEKRLR KEERRRRREE RHRRRAERHA SKRKLKNTDT VTMPSDSEKD RDSDSDGDVR KRVSNAGREE SDQKKLEIEL REKALESLRA
901: KKAINN
001: MSGGFFRGTS AEQDTRFSNK QAKLMKSQKF APELENLVDI TKVKMDVMKP WIATRVTELL GIEDEVLINF IYGLLDGKVV NGKEIQITLT GFMEKNTGKF
101: MKELWTLLLS AQNNPSGVPQ QFLDARAAET KKKQEEANEI MKKREGDKKN IEHDILRKID SGVEHKETNG MDAKPSRDRP EDGRRADEKN GVKERRRDLI
201: PPRRGDASRS PLRGSRSRSI SKTNSGSKSY SGERKSRSTS QSSDASISPR KRRLSNSRRR SRSRSVRRSL SPRRRRIHSP FRSRSRSPIR RHRRPTHEGR
301: RQSPAPSRRR RSPSPPARRR RSPSPPARRR RSPSPPARRH RSPTPPARQR RSPSPPARRH RSPPPARRRR SPSPPARRRR SPSPPARRRR SPSPLYRRNR
401: SPSPLYRRNR SRSPLAKRGR SDSPGRSPSP VARLRDPTGA RLPSPSIEQR LPSPPVAQRL PSPPPRRAGL PSPPPAQRLP SPPPRRAGLP SPMRIGGSHA
501: ANHLESPSPS SLSPPGRKKV LPSPPVRRRR SLTPDEERVS LSQGGRHTSP SHIKQDGSMS PVRGRGKSSP SSRHQKARSP VRRRSPTPVN RRSRRSSSAS
601: RSPDRRRRRS PSSSRSPSRS RSPPVLHRSP SPRGRKHQRE RRSPGRLSEE QDRVQNSKLL KRTSVPDTDK RKQLPEKLLE VGRVEHYKEQ ERKSDKLSEK
701: RSVHRHHGSQ MSPVENSEGR SRPVSSKVKD SEQVEKEDNS DLDANLSCDS KDTIRHQIKD KNRRKNKRSS REEVSSDDNG SSDSDVDDRK EAKRRRKEEK
801: KTRKEEKKRR REERHRKREE RRGGKEKHKK QELSDTSEGE VEARPKIKKG EESDPKRLEI ELRNKALESL KAKKGISH
101: MKELWTLLLS AQNNPSGVPQ QFLDARAAET KKKQEEANEI MKKREGDKKN IEHDILRKID SGVEHKETNG MDAKPSRDRP EDGRRADEKN GVKERRRDLI
201: PPRRGDASRS PLRGSRSRSI SKTNSGSKSY SGERKSRSTS QSSDASISPR KRRLSNSRRR SRSRSVRRSL SPRRRRIHSP FRSRSRSPIR RHRRPTHEGR
301: RQSPAPSRRR RSPSPPARRR RSPSPPARRR RSPSPPARRH RSPTPPARQR RSPSPPARRH RSPPPARRRR SPSPPARRRR SPSPPARRRR SPSPLYRRNR
401: SPSPLYRRNR SRSPLAKRGR SDSPGRSPSP VARLRDPTGA RLPSPSIEQR LPSPPVAQRL PSPPPRRAGL PSPPPAQRLP SPPPRRAGLP SPMRIGGSHA
501: ANHLESPSPS SLSPPGRKKV LPSPPVRRRR SLTPDEERVS LSQGGRHTSP SHIKQDGSMS PVRGRGKSSP SSRHQKARSP VRRRSPTPVN RRSRRSSSAS
601: RSPDRRRRRS PSSSRSPSRS RSPPVLHRSP SPRGRKHQRE RRSPGRLSEE QDRVQNSKLL KRTSVPDTDK RKQLPEKLLE VGRVEHYKEQ ERKSDKLSEK
701: RSVHRHHGSQ MSPVENSEGR SRPVSSKVKD SEQVEKEDNS DLDANLSCDS KDTIRHQIKD KNRRKNKRSS REEVSSDDNG SSDSDVDDRK EAKRRRKEEK
801: KTRKEEKKRR REERHRKREE RRGGKEKHKK QELSDTSEGE VEARPKIKKG EESDPKRLEI ELRNKALESL KAKKGISH
Arabidopsis Description
At2g29210/F16P2.41 [Source:UniProtKB/TrEMBL;Acc:Q8L7W3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.