Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr10P... | |
| GSMUA_Achr6P16520_001 | |
| GSMUA_Achr9P03820_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G29210.1 | GSMUA_Achr10P... | AT2G29210.1 | 21798944 |
| AT2G29210.1 | GSMUA_Achr9P03820_001 | AT2G29210.1 | 21798944 |
| AT2G29210.1 | GSMUA_Achr6P16520_001 | AT4G33690.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | nucleus | 87.8 | 8.53 |
| TraesCS4A01G094800.1 | Wheat | nucleus | 81.71 | 8.13 |
| HORVU4Hr1G060270.6 | Barley | nucleus | 81.71 | 8.12 |
| TraesCS4D01G210400.1 | Wheat | nucleus | 81.71 | 8.11 |
| TraesCS4B01G209700.1 | Wheat | nucleus | 81.71 | 8.11 |
| Os03t0270200-01 | Rice | nucleus | 82.93 | 8.1 |
| CDY65665 | Canola | nucleus | 78.05 | 7.83 |
| AT2G29210.1 | Thale cress | nucleus | 81.71 | 7.63 |
| CDY45430 | Canola | nucleus | 78.05 | 7.63 |
| KXG39705 | Sorghum | nucleus | 81.71 | 7.61 |
| VIT_06s0004g05220.t01 | Wine grape | nucleus | 85.37 | 7.59 |
| Bra018407.1-P | Field mustard | nucleus | 78.05 | 7.58 |
| PGSC0003DMT400071935 | Potato | nucleus | 80.49 | 7.48 |
| Zm00001d028579_P027 | Maize | nucleus | 80.49 | 7.28 |
| Solyc09g030390.2.1 | Tomato | nucleus | 81.71 | 7.27 |
| KRH24737 | Soybean | nucleus | 78.05 | 7.19 |
| KRH29744 | Soybean | nucleus | 79.27 | 7.1 |
| Zm00001d047831_P001 | Maize | nucleus | 2.44 | 0.56 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr9P03820_001 | EnsemblPlants:GSMUA_Achr9T03820_001 | EnsemblPlantsGene:GSMUA_Achr9G03820_001 | Gene3D:1.20.1390.10 | GO:GO:0006139 | GO:GO:0006397 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | InterPro:IPR002483 | InterPro:PWI_dom | InterPro:PWI_dom_sf |
| PANTHER:PTHR23148 | PFAM:PF01480 | PFscan:PS51025 | SUPFAM:SSF101233 | UniParc:UPI0002962B0C | UniProt:M0TX91 |
| MapMan:17.3.1.2.2 | : | : | : | : | : |
Description
Serine/arginine repetitive matrix protein 1 [Source:GMGC_GENE;Acc:GSMUA_Achr9G03820_001]
Coordinates
chr9:-:2614218..2615233
Molecular Weight (calculated)
9338.2 Da
IEP (calculated)
5.812
GRAVY (calculated)
-0.199
Length
82 amino acids
Sequence
(BLAST)
(BLAST)
1: MSGGFFRGTS AEQDTRFSNK QAKLLKSQKF AAELDHPVDM TKVQMDVIRP WIATRVTELL GFEDEVLINF VYGLLDGKAC YY
001: MSGGFFRGTS AEQDTRFSNK QAKLMKSQKF APELENLVDI TKVKMDVMKP WIATRVTELL GIEDEVLINF IYGLLDGKVV NGKEIQITLT GFMEKNTGKF
101: MKELWTLLLS AQNNPSGVPQ QFLDARAAET KKKQEEANEI MKKREGDKKN IEHDILRKID SGVEHKETNG MDAKPSRDRP EDGRRADEKN GVKERRRDLI
201: PPRRGDASRS PLRGSRSRSI SKTNSGSKSY SGERKSRSTS QSSDASISPR KRRLSNSRRR SRSRSVRRSL SPRRRRIHSP FRSRSRSPIR RHRRPTHEGR
301: RQSPAPSRRR RSPSPPARRR RSPSPPARRR RSPSPPARRH RSPTPPARQR RSPSPPARRH RSPPPARRRR SPSPPARRRR SPSPPARRRR SPSPLYRRNR
401: SPSPLYRRNR SRSPLAKRGR SDSPGRSPSP VARLRDPTGA RLPSPSIEQR LPSPPVAQRL PSPPPRRAGL PSPMRIGGSH AANHLESPSP SSLSPPGRKK
501: VLPSPPVRRR RSLTPDEERV SLSQGGRHTS PSHIKQDGSM SPVRGRGKSS PSSRHQKARS PVRRRSPTPV NRRSRRSSSA SRSPDRRRRR SPSSSRSPSR
601: SRSPPVLHRS PSPRGRKHQR ERRSPGRLSE EQDRVQNSKL LKRTSVPDTD KRKQLPEKLL EVGRVEHYKE QERKSDKLSE KRSVHRHHGS QMSPVENSEG
701: RSRPVSSKVK DSEQVEKEDN SDLDANLSCD SKDTIRHQIK DKNRRKNKRS SREEVSSDDN GSSDSDVDDR KEAKRRRKEE KKTRKEEKKR RREERHRKRE
801: ERRGGKEKHK KQELSDTSEG EVEARPKIKK GEESDPKRLE IELRNKALES LKAKKGISH
101: MKELWTLLLS AQNNPSGVPQ QFLDARAAET KKKQEEANEI MKKREGDKKN IEHDILRKID SGVEHKETNG MDAKPSRDRP EDGRRADEKN GVKERRRDLI
201: PPRRGDASRS PLRGSRSRSI SKTNSGSKSY SGERKSRSTS QSSDASISPR KRRLSNSRRR SRSRSVRRSL SPRRRRIHSP FRSRSRSPIR RHRRPTHEGR
301: RQSPAPSRRR RSPSPPARRR RSPSPPARRR RSPSPPARRH RSPTPPARQR RSPSPPARRH RSPPPARRRR SPSPPARRRR SPSPPARRRR SPSPLYRRNR
401: SPSPLYRRNR SRSPLAKRGR SDSPGRSPSP VARLRDPTGA RLPSPSIEQR LPSPPVAQRL PSPPPRRAGL PSPMRIGGSH AANHLESPSP SSLSPPGRKK
501: VLPSPPVRRR RSLTPDEERV SLSQGGRHTS PSHIKQDGSM SPVRGRGKSS PSSRHQKARS PVRRRSPTPV NRRSRRSSSA SRSPDRRRRR SPSSSRSPSR
601: SRSPPVLHRS PSPRGRKHQR ERRSPGRLSE EQDRVQNSKL LKRTSVPDTD KRKQLPEKLL EVGRVEHYKE QERKSDKLSE KRSVHRHHGS QMSPVENSEG
701: RSRPVSSKVK DSEQVEKEDN SDLDANLSCD SKDTIRHQIK DKNRRKNKRS SREEVSSDDN GSSDSDVDDR KEAKRRRKEE KKTRKEEKKR RREERHRKRE
801: ERRGGKEKHK KQELSDTSEG EVEARPKIKK GEESDPKRLE IELRNKALES LKAKKGISH
Arabidopsis Description
At2g29210/F16P2.41 [Source:UniProtKB/TrEMBL;Acc:Q8L7W3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.